; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011453 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011453
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr1:25151562..25155860
RNA-Seq ExpressionLag0011453
SyntenyLag0011453
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR000408 - Regulator of chromosome condensation, RCC1
IPR009091 - Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035107.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4958.49Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        MVFLKLRPYR TSL  +RNEKLSPK+FGPY I ERIGKVAY+L+LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW   P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

KAA0051400.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]4.2e-4960.37Show/hide
Query:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE
        VFLKLRPYR TSL  +RNEKLSPKYFGPY I ERIG VAY+LKLPS A++HPVFHVSQLKK +GN    QP+ P + E  EW  +P++IY  RKNQ + E
Subjt:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE

Query:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGN
         E LVSWK LP HEATW      + +FP +HLEDKV L  + D RPPI+  Y RR    G +GN
Subjt:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGN

KAA0058186.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4957.86Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        +VFLKLRPYR TSL  +RNEKLSPKYFGPY + ERIGKVAY+L+LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW   P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

KAA0063300.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-4959.04Show/hide
Query:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE
        VFLKLRPYR TSL  +RNEKLSPKYFGPY I ERIG VAY+L+LPS A++HPVFHVSQLKK +GN   VQP+ P + E  EW  +P++IY  RKNQ + E
Subjt:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE

Query:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGNAD
         E LV WK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y RR    G +GN +
Subjt:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGNAD

TYJ96499.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4957.86Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        +VFLKLRPYR TSL  +RNEKLSPKYFGPY + ERIGKVAY+L+LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW   P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

TrEMBL top hitse value%identityAlignment
A0A5A7T0J9 Ty3/gypsy retrotransposon protein3.5e-4958.49Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        MVFLKLRPYR TSL  +RNEKLSPK+FGPY I ERIGKVAY+L+LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW   P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

A0A5A7TML6 Ty3/gypsy retrotransposon protein3.5e-4957.86Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        +VFLKLRPYR TSL  +RNEKLSPKYFGPY + ERIGKVAY+L+LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW   P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

A0A5A7TZ75 Retrotransposable element Tf23.5e-4957.23Show/hide
Query:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG
        +VFLKLRPYR TSL   RNEKLSPKYFGPY + ERIGKVAY+++LP+ A++HPVFHVSQLKK +G    VQP+ P +  N EW  +P+++Y+ RKN  + 
Subjt:  MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSG

Query:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK
        E E L+SWK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y R+ KK
Subjt:  ETELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKK

A0A5A7U8A5 Putative retroelement pol polyprotein2.0e-4960.37Show/hide
Query:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE
        VFLKLRPYR TSL  +RNEKLSPKYFGPY I ERIG VAY+LKLPS A++HPVFHVSQLKK +GN    QP+ P + E  EW  +P++IY  RKNQ + E
Subjt:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE

Query:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGN
         E LVSWK LP HEATW      + +FP +HLEDKV L  + D RPPI+  Y RR    G +GN
Subjt:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGN

A0A5A7V7S9 Ty3/gypsy retrotransposon protein1.6e-4959.04Show/hide
Query:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE
        VFLKLRPYR TSL  +RNEKLSPKYFGPY I ERIG VAY+L+LPS A++HPVFHVSQLKK +GN   VQP+ P + E  EW  +P++IY  RKNQ + E
Subjt:  VFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGE

Query:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGNAD
         E LV WK LP HEATW   +  + +FP +HLEDKV L  + D RPPI+  Y RR    G +GN +
Subjt:  TELLVSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARR----GKKGNAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein2.2e-2780.65Show/hide
Query:  IFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILEY
        +FTWGWGGSHGTFSVDGHSSGGQLGHGSDVDY +P M+DLG+NV+AV +SCGFNHT A+LE+
Subjt:  IFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILEY

AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein2.6e-0433.33Show/hide
Query:  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILE
        G ++ WGW            +  GQ+G G+++D   P  +   ++ K VQVSCG+ HT A+ E
Subjt:  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTTCTGAAACTTCGGCCCTACCGACATACATCATTAGCTAATCGTCGGAACGAGAAGTTGTCTCCTAAATACTTCGGTCCTTACGAGATAGAAGAACGA
ATTGGGAAGGTTGCCTACCGCCTAAAATTGCCATCAACGGCCAGCGTGCACCCAGTGTTCCATGTCTCTCAGCTCAAGAAGATGTTAGGGAACAAGAATGTTGTG
CAGCCAATTCCACCTCCAATAACGGAGAATTTTGAGTGGCAGGCTGAACCAGATGACATTTACACATGTAGAAAGAACCAAGGCAGTGGGGAAACTGAGTTACTA
GTTAGTTGGAAGCATCTACCGGAACATGAAGCTACTTGGATGCTTTTATCAGCCTTTCGAGAGAAGTTTCCCACTTACCACCTTGAGGACAAGGTGTCTTTGACC
CCCGATGGTGATGTTAGGCCTCCAATCATCTTGCAATATGCTCGAAGGGGTAAAAAGGGAAATGCAGACCCAACATTCCTGCAGAATCGGTTTAGACGTGGCGCC
ATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCG
ACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAAGCTTCTCGTTCCTTCTCAATG
ATGACAGGTGAATCTTCTTCAGCTCCTATGACTACACCGTTGGCCTCTCCTTCTACCCCAAACAATACACTAGTCGTAATCCCGATAAACCAACCTCTAAATCCT
ACTGTTCAGCCTCCAAATCAACCATTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATTTCTGAAACTTCGGCCCTACCGACATACATCATTAGCTAATCGTCGGAACGAGAAGTTGTCTCCTAAATACTTCGGTCCTTACGAGATAGAAGAACGA
ATTGGGAAGGTTGCCTACCGCCTAAAATTGCCATCAACGGCCAGCGTGCACCCAGTGTTCCATGTCTCTCAGCTCAAGAAGATGTTAGGGAACAAGAATGTTGTG
CAGCCAATTCCACCTCCAATAACGGAGAATTTTGAGTGGCAGGCTGAACCAGATGACATTTACACATGTAGAAAGAACCAAGGCAGTGGGGAAACTGAGTTACTA
GTTAGTTGGAAGCATCTACCGGAACATGAAGCTACTTGGATGCTTTTATCAGCCTTTCGAGAGAAGTTTCCCACTTACCACCTTGAGGACAAGGTGTCTTTGACC
CCCGATGGTGATGTTAGGCCTCCAATCATCTTGCAATATGCTCGAAGGGGTAAAAAGGGAAATGCAGACCCAACATTCCTGCAGAATCGGTTTAGACGTGGCGCC
ATATTCACGTGGGGCTGGGGAGGTTCTCATGGAACGTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGACATGGAAGTGACGTTGACTATGTGAAACCG
ACAATGATCGACCTTGGAGAGAATGTGAAGGCAGTACAAGTCTCCTGTGGATTCAACCACACTGGTGCAATACTCGAGTACAAAGCTTCTCGTTCCTTCTCAATG
ATGACAGGTGAATCTTCTTCAGCTCCTATGACTACACCGTTGGCCTCTCCTTCTACCCCAAACAATACACTAGTCGTAATCCCGATAAACCAACCTCTAAATCCT
ACTGTTCAGCCTCCAAATCAACCATTTTTTTGA
Protein sequenceShow/hide protein sequence
MVFLKLRPYRHTSLANRRNEKLSPKYFGPYEIEERIGKVAYRLKLPSTASVHPVFHVSQLKKMLGNKNVVQPIPPPITENFEWQAEPDDIYTCRKNQGSGETELL
VSWKHLPEHEATWMLLSAFREKFPTYHLEDKVSLTPDGDVRPPIILQYARRGKKGNADPTFLQNRFRRGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP
TMIDLGENVKAVQVSCGFNHTGAILEYKASRSFSMMTGESSSAPMTTPLASPSTPNNTLVVIPINQPLNPTVQPPNQPFF