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Lag0011467 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011467
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr1:25661405..25664494
RNA-Seq ExpressionLag0011467
SyntenyLag0011467
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3675381.1 40S ribosomal protein S13 [Capsicum annuum]1.7e-0489.66Show/hide
Query:  RLAPEIPKDLYHLIKKVVSIRKHLQRNRK
        RLAPEIP+DLYHLIKKVV+IRKHL+RNRK
Subjt:  RLAPEIPKDLYHLIKKVVSIRKHLQRNRK

KAF5094629.1 hypothetical protein DV451_004968 [Geotrichum candidum]1.7e-0476.47Show/hide
Query:  IFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRKTM
        IF  LAPEIP+DLYHLIKK VS+RKHL++NRK M
Subjt:  IFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRKTM

KAF5199848.1 40S ribosomal protein S13 [Thalictrum thalictroides]2.2e-0467.5Show/hide
Query:  VEALDDAIIFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRK
        V  +D   +F  LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  VEALDDAIIFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRK

KCW64972.1 hypothetical protein EUGRSUZ_G02515 [Eucalyptus grandis]1.7e-0486.67Show/hide
Query:  SRLAPEIPKDLYHLIKKVVSIRKHLQRNRK
        +RLAPEIP+DLYHLIKK VSIRKHL+RNRK
Subjt:  SRLAPEIPKDLYHLIKKVVSIRKHLQRNRK

TYK06449.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]2.9e-0492.86Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKKVVSIRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

TrEMBL top hitse value%identityAlignment
A0A059BFJ8 Ribosomal_S13_N domain-containing protein8.2e-0586.67Show/hide
Query:  SRLAPEIPKDLYHLIKKVVSIRKHLQRNRK
        +RLAPEIP+DLYHLIKK VSIRKHL+RNRK
Subjt:  SRLAPEIPKDLYHLIKKVVSIRKHLQRNRK

A0A5A7SI60 40S ribosomal protein S131.4e-0492.86Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKKVVSIRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

A0A5A7U9F0 Putative ribosomal protein S131.4e-0492.86Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKKVVSIRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

A0A5A7V2Y4 40S ribosomal protein S13-like1.4e-0492.86Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKKVVSIRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

A0A7J6WSN3 40S ribosomal protein S131.1e-0467.5Show/hide
Query:  VEALDDAIIFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRK
        V  +D   +F  LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  VEALDDAIIFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRK

SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-12.5e-0685.71Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

P59224 40S ribosomal protein S13-22.5e-0685.71Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

P62299 40S ribosomal protein S134.2e-0682.14Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        +APEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

P62300 40S ribosomal protein S134.2e-0682.14Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        +APEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

P62302 40S ribosomal protein S131.1e-0689.29Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKK VSIRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.8e-0785.71Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK

AT4G00100.1 ribosomal protein S13A1.8e-0785.71Show/hide
Query:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK
        LAPEIP+DLYHLIKK V+IRKHL+RNRK
Subjt:  LAPEIPKDLYHLIKKVVSIRKHLQRNRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTCCCCTCCCCTCCAACGAATAGCTCCGACGACGACGCAGCAGCAACGGTGGTTCACCGACGTCGATCACTCTTTCGCACAGTCAACGGCGATTTCTGCGTGGG
GAAGCAACTGTTTTCACAATTTTCTGGCAGTTCCGTTCAACAAGCTTTCCCTTCAAATTTCAGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTTTTTGAGCAATTTC
GGCATTGGCTTGTTTTACAAAAGAAGTTTATCAAAATTCATAGCCAAAAGAGAAGTAACAGAGAAATTGATGAGAGCAAGACCAAGGAATCCTTCAGCCTTTTTGAAGGT
GTTGAAGCTCTTGATGATGCAATTATCTTCTCAAGGCTAGCTCCTGAAATCCCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAACATTTGCAGAG
AAACAGGAAAACAATGATTCCAAGTTCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTCCCCTCCCCTCCAACGAATAGCTCCGACGACGACGCAGCAGCAACGGTGGTTCACCGACGTCGATCACTCTTTCGCACAGTCAACGGCGATTTCTGCGTGGG
GAAGCAACTGTTTTCACAATTTTCTGGCAGTTCCGTTCAACAAGCTTTCCCTTCAAATTTCAGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTTTTTGAGCAATTTC
GGCATTGGCTTGTTTTACAAAAGAAGTTTATCAAAATTCATAGCCAAAAGAGAAGTAACAGAGAAATTGATGAGAGCAAGACCAAGGAATCCTTCAGCCTTTTTGAAGGT
GTTGAAGCTCTTGATGATGCAATTATCTTCTCAAGGCTAGCTCCTGAAATCCCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAACATTTGCAGAG
AAACAGGAAAACAATGATTCCAAGTTCAGGTTGA
Protein sequenceShow/hide protein sequence
MCVPSPPTNSSDDDAAATVVHRRRSLFRTVNGDFCVGKQLFSQFSGSSVQQAFPSNFSDSSSGSSTFNVFEQFRHWLVLQKKFIKIHSQKRSNREIDESKTKESFSLFEG
VEALDDAIIFSRLAPEIPKDLYHLIKKVVSIRKHLQRNRKTMIPSSG