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Lag0011468 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011468
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:25667112..25670197
RNA-Seq ExpressionLag0011468
SyntenyLag0011468
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]1.2e-2863.41Show/hide
Query:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL
        MVV+TT  K  SK    EKRQ  G     TLKERQ K+Y F     PDML+QLLE QLI+LP+CKRP EM KV+DP YCKYHRVI HPVE+CFVLK+LIL
Subjt:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL

Query:  KLAMEGKIELDLDEVTQSNLATI
        KLA++ KIEL+LD+V Q+N A +
Subjt:  KLAMEGKIELDLDEVTQSNLATI

KAA0055891.1 uncharacterized protein E6C27_scaffold438G00090 [Cucumis melo var. makuwa]1.9e-2963.41Show/hide
Query:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL
        MVV+TT  K  SK    EKRQ  G   H TLKERQ K+Y F     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LIL
Subjt:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL

Query:  KLAMEGKIELDLDEVTQSNLATI
        KLA++ KIEL+LD++ Q+N A +
Subjt:  KLAMEGKIELDLDEVTQSNLATI

KAA0055958.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2863.93Show/hide
Query:  MVVNTTFPKSSSKE----KRQTNGT--HHLTLKERQNKVYHFP-----DMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLI
        MVVNTT  K S ++    K++ +G+    LTLKERQ KVY FP     DMLEQLLE QLI+LP+CKRP++  KVDDP YCKYHRVI HPVE+CFVLK+LI
Subjt:  MVVNTTFPKSSSKE----KRQTNGT--HHLTLKERQNKVYHFP-----DMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLI

Query:  LKLAMEGKIELDLDEVTQSNLA
        L+LA E KIELDL+EV Q+N A
Subjt:  LKLAMEGKIELDLDEVTQSNLA

TYK16274.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2967.92Show/hide
Query:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ
        EKRQ  G   H TLKERQ K+YHF     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LILKLA++ KIEL+LD+V Q
Subjt:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ

Query:  SNLATI
        +N A +
Subjt:  SNLATI

TYK18947.1 uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa]1.1e-2967.92Show/hide
Query:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ
        EKRQ  G   H TLKERQ K+YHF     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LILKLA++ KIEL+LD+V Q
Subjt:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ

Query:  SNLATI
        +N A +
Subjt:  SNLATI

TrEMBL top hitse value%identityAlignment
A0A5A7UJR2 Reverse transcriptase5.9e-2963.41Show/hide
Query:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL
        MVV+TT  K  SK    EKRQ  G     TLKERQ K+Y F     PDML+QLLE QLI+LP+CKRP EM KV+DP YCKYHRVI HPVE+CFVLK+LIL
Subjt:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL

Query:  KLAMEGKIELDLDEVTQSNLATI
        KLA++ KIEL+LD+V Q+N A +
Subjt:  KLAMEGKIELDLDEVTQSNLATI

A0A5A7ULK6 Retrotransposon gag protein5.9e-2963.93Show/hide
Query:  MVVNTTFPKSSSKE----KRQTNGT--HHLTLKERQNKVYHFP-----DMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLI
        MVVNTT  K S ++    K++ +G+    LTLKERQ KVY FP     DMLEQLLE QLI+LP+CKRP++  KVDDP YCKYHRVI HPVE+CFVLK+LI
Subjt:  MVVNTTFPKSSSKE----KRQTNGT--HHLTLKERQNKVYHFP-----DMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLI

Query:  LKLAMEGKIELDLDEVTQSNLA
        L+LA E KIELDL+EV Q+N A
Subjt:  LKLAMEGKIELDLDEVTQSNLA

A0A5A7UQP2 Integrase catalytic domain-containing protein9.2e-3063.41Show/hide
Query:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL
        MVV+TT  K  SK    EKRQ  G   H TLKERQ K+Y F     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LIL
Subjt:  MVVNTTFPKSSSK----EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL

Query:  KLAMEGKIELDLDEVTQSNLATI
        KLA++ KIEL+LD++ Q+N A +
Subjt:  KLAMEGKIELDLDEVTQSNLATI

A0A5D3CZ90 Ty3-gypsy retrotransposon protein5.4e-3067.92Show/hide
Query:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ
        EKRQ  G   H TLKERQ K+YHF     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LILKLA++ KIEL+LD+V Q
Subjt:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ

Query:  SNLATI
        +N A +
Subjt:  SNLATI

A0A5D3D5V8 RNase H domain-containing protein5.4e-3067.92Show/hide
Query:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ
        EKRQ  G   H TLKERQ K+YHF     PDML+QLLE QLI+LPKCKRP EM +V+DP YCKYHRVI HPVE+CFVLK+LILKLA++ KIEL+LD+V Q
Subjt:  EKRQTNG-THHLTLKERQNKVYHF-----PDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQ

Query:  SNLATI
        +N A +
Subjt:  SNLATI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTAAACACAACTTTTCCCAAGTCATCTTCGAAAGAAAAGCGACAAACAAATGGAACACATCACTTAACTTTAAAGGAAAGACAGAACAAAGTCTATCATTTCCC
TGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAAAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAG
TTATTGGTCATCCAGTGGAAAGATGTTTTGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAACCCAATCAAATCTT
GCTACAATCAAAGAAAAGAGCAAGCATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAAAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTT
GAATAAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTTCTGCATCGACGTAAAATACGTGACAATTCCAAGAAGGGTGGACAAAGGAC
TTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTTCTCAGGCTGCGCTGTTGCACTACTTCCTTCTTTAAGTTTCAAGGTTTCCACATTGCGTTGTTGT
GCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACTCTGTGCTGCTTTCTTCTCCAAGTTCGAAGGTTCTGACTCTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCCCACT
CTGCGCTGCTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCTCACATTGCGTTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGTGTTGCTTCCTTCAC
CAAGTTCGAAGGTTCTCACGCTGCGTTTCGCTGTTCTTTCTCCAAGTTCAAAGTTTGCACGCTGTGTTGCTGCGCACTGCTTCCTTCTCTCTCAAAGTTCTCACACTACT
AGATGTGCCAACCTCTCCAAGTTTGAAGGGCGCTACTACGCTACCGATCCAAGTTCGAAGGGCACTGCTATGCTGCCAGTCCCTTCTCTCTCCAAGTTCAAAGGTTCTGA
TGATACGCTGCTTCCTTCACCAATTCTTTCCTCTAAGTTCGAAGGTTCTCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACGTTGCTTCGATGTTGTTCCTTCTCCAAG
TTCGATGGTTCTCATGCCACGTCGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTTTCATACTGCGCTGCTACGCTGCTTCCTTCTCCAAGTTCAAAGGTTTTCATACTA
CGCTGCTTCGCTGCTATTTCTTCTCCAAGTTTGAAGGTTCGCACGCTGTACGCTGCTTCCCTGTTGTTCCCTCTTCAAGAAATGGTTGATTGGAGCTGTAGCGCAATATT
GGAATTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAAAAGTGGAAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCGAGACGCTAGCTC
TTGAGCGTCTCGATCCTCACATTCCATATCAGATTAGGCGCGTAAAGCTCACAGCGTCGAGACGCTGTGATAGGAAGCGTCCCGACGCTACCGTTTTTCCTTATTCAGAA
CGCGCGTATAAGAGGCAGCGTCGCGACGCTAAGACAAAAAAAACAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTAAACACAACTTTTCCCAAGTCATCTTCGAAAGAAAAGCGACAAACAAATGGAACACATCACTTAACTTTAAAGGAAAGACAGAACAAAGTCTATCATTTCCC
TGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAAAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAG
TTATTGGTCATCCAGTGGAAAGATGTTTTGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAACCCAATCAAATCTT
GCTACAATCAAAGAAAAGAGCAAGCATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAAAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTT
GAATAAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCCTTCTGCATCGACGTAAAATACGTGACAATTCCAAGAAGGGTGGACAAAGGAC
TTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTTCTCAGGCTGCGCTGTTGCACTACTTCCTTCTTTAAGTTTCAAGGTTTCCACATTGCGTTGTTGT
GCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACTCTGTGCTGCTTTCTTCTCCAAGTTCGAAGGTTCTGACTCTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCCCACT
CTGCGCTGCTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCTCACATTGCGTTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGTGTTGCTTCCTTCAC
CAAGTTCGAAGGTTCTCACGCTGCGTTTCGCTGTTCTTTCTCCAAGTTCAAAGTTTGCACGCTGTGTTGCTGCGCACTGCTTCCTTCTCTCTCAAAGTTCTCACACTACT
AGATGTGCCAACCTCTCCAAGTTTGAAGGGCGCTACTACGCTACCGATCCAAGTTCGAAGGGCACTGCTATGCTGCCAGTCCCTTCTCTCTCCAAGTTCAAAGGTTCTGA
TGATACGCTGCTTCCTTCACCAATTCTTTCCTCTAAGTTCGAAGGTTCTCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACGTTGCTTCGATGTTGTTCCTTCTCCAAG
TTCGATGGTTCTCATGCCACGTCGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTTTCATACTGCGCTGCTACGCTGCTTCCTTCTCCAAGTTCAAAGGTTTTCATACTA
CGCTGCTTCGCTGCTATTTCTTCTCCAAGTTTGAAGGTTCGCACGCTGTACGCTGCTTCCCTGTTGTTCCCTCTTCAAGAAATGGTTGATTGGAGCTGTAGCGCAATATT
GGAATTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAAAAGTGGAAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCGAGACGCTAGCTC
TTGAGCGTCTCGATCCTCACATTCCATATCAGATTAGGCGCGTAAAGCTCACAGCGTCGAGACGCTGTGATAGGAAGCGTCCCGACGCTACCGTTTTTCCTTATTCAGAA
CGCGCGTATAAGAGGCAGCGTCGCGACGCTAAGACAAAAAAAACAGAATAA
Protein sequenceShow/hide protein sequence
MVVNTTFPKSSSKEKRQTNGTHHLTLKERQNKVYHFPDMLEQLLEAQLIELPKCKRPKEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMEGKIELDLDEVTQSNL
ATIKEKSKHQRKKDLKKLQPKRKKSKKFSQPQQLVMLNKFFSKTFHKKEKENFATSFCIDVKYVTIPRRVDKGLPSSIASSLQLLVLRFSGCAVALLPSLSFKVSTLRCC
AASFSKFEGSDSVLLSSPSSKVLTLCCFLHQVRRFPLCAAALLPSLSSKVLTLRCCAASFSKFEGSDVVLLPSPSSKVLTLRFAVLSPSSKFARCVAAHCFLLSQSSHTT
RCANLSKFEGRYYATDPSSKGTAMLPVPSLSKFKGSDDTLLPSPILSSKFEGSQFLLSKFEGSHVASMLFLLQVRWFSCHVASLFLLQVRRFSYCAATLLPSPSSKVFIL
RCFAAISSPSLKVRTLYAASLLFPLQEMVDWSCSAILELIGCSGREKMQRNEKSKSGKKSNLGQQQASVETLALERLDPHIPYQIRRVKLTASRRCDRKRPDATVFPYSE
RAYKRQRRDAKTKKTE