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Lag0011482 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011482
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:25988333..25992627
RNA-Seq ExpressionLag0011482
SyntenyLag0011482
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.4e-1174.47Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.0e-0973.33Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-0781.82Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
        +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-1272.34Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-0781.82Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
        +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein7.0e-1274.47Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
A0A5A7U202 Reverse transcriptase3.9e-0781.82Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
        +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein5.0e-1073.33Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
A0A5D3C3J6 Gag/pol protein3.1e-1272.34Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR
A0A5D3CBX3 Reverse transcriptase3.9e-0781.82Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
        +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRVGSWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTATCCCAGGGGTCCATTAGGTCCCACCG
GTAGTTCATTTAGGGCGTTGAGCGAAAACAGGGATTCCAAGTTGCTGTTTTTGGGAGCAATTCAGAGAAATTTTGGTGAATCGATCAAGAATTTCTACAAAGCACTCCGA
ATGACCCAGTATGAGGCCGACCAGGCAAGCCGAAAGGGAGATAGCTGTGCTCGGCCTCTTCTCGAGGCCGAGGCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTT
CATTTCCATTTCATCTAACCCCTATTCAGGGAATGTCTACTTTGTGTGTTCCTATCCTACTTTGCAGGATGACGATAAAGCTGCACATAGGCAATTTTGGACCACCCCGA
TGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGATACGAGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAAGCCGAAGGGGTCGGGATTTTGG
CCCGACCCCCTACTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCACCTGGCCACGTCTTCCCCCCTCTTC
TACAAATTTTTCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCAAAAATCGACCATCAACAGGTTTAGCAGCTAGCCTTGACTTAAAGGGTTTCTTCCGAGGCT
CTGAGGGATTGTGGTCGGTTAATGCCCAAAATGGGCTCGGGCCCATTCCCTTGGTCGGCCATCTCCTCAGCCTCGTGAATGGGCCGAGGCCAAAGAGAAAGATGGAAGGG
GAGAGGGGCGGCCTTCAACCCTCTTCTGGTTGTGCTGGGTTGCTTTCTGACATTCAGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTATCCCAGGGGTCCATTAGGTCCCACCG
GTAGTTCATTTAGGGCGTTGAGCGAAAACAGGGATTCCAAGTTGCTGTTTTTGGGAGCAATTCAGAGAAATTTTGGTGAATCGATCAAGAATTTCTACAAAGCACTCCGA
ATGACCCAGTATGAGGCCGACCAGGCAAGCCGAAAGGGAGATAGCTGTGCTCGGCCTCTTCTCGAGGCCGAGGCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTT
CATTTCCATTTCATCTAACCCCTATTCAGGGAATGTCTACTTTGTGTGTTCCTATCCTACTTTGCAGGATGACGATAAAGCTGCACATAGGCAATTTTGGACCACCCCGA
TGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGATACGAGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAAGCCGAAGGGGTCGGGATTTTGG
CCCGACCCCCTACTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCACCTGGCCACGTCTTCCCCCCTCTTC
TACAAATTTTTCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCAAAAATCGACCATCAACAGGTTTAGCAGCTAGCCTTGACTTAAAGGGTTTCTTCCGAGGCT
CTGAGGGATTGTGGTCGGTTAATGCCCAAAATGGGCTCGGGCCCATTCCCTTGGTCGGCCATCTCCTCAGCCTCGTGAATGGGCCGAGGCCAAAGAGAAAGATGGAAGGG
GAGAGGGGCGGCCTTCAACCCTCTTCTGGTTGTGCTGGGTTGCTTTCTGACATTCAGGCCTGA
Protein sequenceShow/hide protein sequence
MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMRVSRGCSLEEHWYLRTKRYPRGPLGPTGSSFRALSENRDSKLLFLGAIQRNFGESIKNFYKALR
MTQYEADQASRKGDSCARPLLEAEADQHHFCNLSPFFISISSNPYSGNVYFVCSYPTLQDDDKAAHRQFWTTPMYEELTRTTGEKSGWDTSQGGGAGKRDGPKPKGSGFW
PDPLLGPLARAEPVRSRLVPTASGCPGFTWPRLPPSSTNFSLVAREGQVRSSGKNRPSTGLAASLDLKGFFRGSEGLWSVNAQNGLGPIPLVGHLLSLVNGPRPKRKMEG
ERGGLQPSSGCAGLLSDIQA