; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011492 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011492
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:26183173..26188158
RNA-Seq ExpressionLag0011492
SyntenyLag0011492
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]8.4e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]2.4e-1963.27Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+ + SRMKRK SV INTEGSL +   F
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1962Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.4e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
A0A5A7TQ06 Retrotransposon gag protein4.1e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
A0A5A7URU7 Gag protease polyprotein1.2e-1963.27Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+ + SRMKRK SV INTEGSL +   F
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
A0A5D3BBF9 Gag protease polyprotein4.1e-2063Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
A0A5D3D209 Retrotransposon gag protein1.2e-1962Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + K F E N D K+HS + SRMKRK SV INTEGSL +   F
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCTGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTTTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGATTCTTACGCACTTCGCTGGAGTTCATTCTCTTCAAGTTCGAAGG
TTCTCATGCTCTTCGCAACAGTTCATTCTCTCCAAATTCGAGGGTGCTTACGTTGTACACTACTGGGTTGTTCCTTCTCCAAGTTTGAGGTTCTCAAGTGTTACACTTTC
TTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGGTGCTTCTTCATCAAGTTCGAAGTTCCTTATCTC
CAATTCGAAGGATCTCGCACATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTCCCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTT
CGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATC
TCACGCATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCATTCTCTTCAAGTTCGAAGGTTCTCACGTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCT
CCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTT
TCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGCTGCAGTCCATTCTCTCAAGTTTGAAAGTTCTCACACTGCTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCC
TTCAGGAAACTATCGTCATCAAAGTGACTGGTCTAGACAAGTGGTGAAGTCACTGCGATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTG
CAGGTTACTCAGATCACCCAATAAAATGGGAACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGT
CTAGCAGGAGTGCATCACTGTAGGCAAATCTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAATAA
GTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCA
AGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAATAAGCTAACAAGC
CGATCCAACAGATCATCAAGCCAACAGGCCGATCCAACAGATCATCAAGTCAGCAGCCGATCATCCAAAGATCAACAAGCAACGATCGAACAGATCATCAAGCCAACAGG
CCGATCCAAGAGATCATCAAGTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCTGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTTTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGATTCTTACGCACTTCGCTGGAGTTCATTCTCTTCAAGTTCGAAGG
TTCTCATGCTCTTCGCAACAGTTCATTCTCTCCAAATTCGAGGGTGCTTACGTTGTACACTACTGGGTTGTTCCTTCTCCAAGTTTGAGGTTCTCAAGTGTTACACTTTC
TTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGGTGCTTCTTCATCAAGTTCGAAGTTCCTTATCTC
CAATTCGAAGGATCTCGCACATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTCCCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTT
CGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATC
TCACGCATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCATTCTCTTCAAGTTCGAAGGTTCTCACGTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCT
CCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTT
TCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGCTGCAGTCCATTCTCTCAAGTTTGAAAGTTCTCACACTGCTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCC
TTCAGGAAACTATCGTCATCAAAGTGACTGGTCTAGACAAGTGGTGAAGTCACTGCGATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTG
CAGGTTACTCAGATCACCCAATAAAATGGGAACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGT
CTAGCAGGAGTGCATCACTGTAGGCAAATCTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAATAA
GTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCA
AGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAATAAGCTAACAAGC
CGATCCAACAGATCATCAAGCCAACAGGCCGATCCAACAGATCATCAAGTCAGCAGCCGATCATCCAAAGATCAACAAGCAACGATCGAACAGATCATCAAGCCAACAGG
CCGATCCAAGAGATCATCAAGTCAGTAG
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHFAGVHSLQVRR
FSCSSQQFILSKFEGAYVVHYWVVPSPSLRFSSVTLSSLSSKVPTLRCCVASFSKFKGSNVAVLLHQVRSSLSPIRRISHISLQFLLSKFEGSRTSLQSLLSSLKVFTLL
RCSSFSKFEGSHVASLQFFPPSSKGSHATPSSKFEGSHAFRCSSFSQSSKFILFKFEGSHVALLQFPSSKSEGSPKSSRRLTRCFAVVSFLQVRRLPKSSRRLTRCFAVV
SFLQVRRFSRCIAAVHSLKFESSHTASKVLTRFATVPSGNYRHQSDWSRQVVKSLRLNLMTTVVGESGLVTTPAGYSDHPIKWELECITEGESGDYPCRLLRSPNKMGTG
LAGVHHCRQIWSASLKANLVTTPADHQANRLIQEINKSTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKKINKPTDRTDHQANRPIQEIIKSAGRSSKRINKLTS
RSNRSSSQQADPTDHQVSSRSSKDQQATIEQIIKPTGRSKRSSSQ