; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011506 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011506
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:26469056..26470963
RNA-Seq ExpressionLag0011506
SyntenyLag0011506
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.1e-1352.13Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK---STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  KEENQC   T+ + SAF+ LS+ I +K   ST+   F RLK+T+DQ +R+M   + K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK---STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.3e-1453.12Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC MST+ R SAF+ LS+   +K     S FD    RLK+T+DQ +R+M +F+ K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-1353.12Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC MST+TR SAF+ LS+   +K     S FD    RLK+T+DQ +R+M + + K F E N D K+ S VPSR+KRK SI INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.9e-1352.17Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEKS-TFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  KEENQC   T+TR SAF+ LS+ I +K       F RLK+T+ Q +R+M + + K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEKS-TFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-1352.08Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC  ST+ R SAF+ LS+   +K     S FD    RLK+T++Q KR+M +F+ K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein3.0e-1453.12Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC MST+ R SAF+ LS+   +K     S FD    RLK+T+DQ +R+M +F+ K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

A0A5A7U974 Retrotransposon gag protein2.0e-1353.12Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC MST+TR SAF+ LS+   +K     S FD    RLK+T+DQ +R+M + + K F E N D K+ S VPSR+KRK SI INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

A0A5A7V6H5 Ty3-gypsy retrotransposon protein3.4e-1352.17Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEKS-TFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  KEENQC   T+TR SAF+ LS+ I +K       F RLK+T+ Q +R+M + + K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEKS-TFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

A0A5D3D209 Retrotransposon gag protein1.5e-1352.08Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC  ST+ R SAF+ LS+   +K     S FD    RLK+T++Q KR+M +F+ K F E N D K+ S VPSRMKRK S+ INTEG
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

A0A5D3D5Q0 Gag protease polyprotein4.4e-1352.08Show/hide
Query:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG
        +SMA  +EENQC  ST+ R SAF+ LS+   +K     STFD    RLK+T+DQ +R+M + + K F E N D K+ S VPSRMKRK SI INT+G
Subjt:  MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEK-----STFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCGAAGCCTAAGTGTCGACATCGAAGAAAAGTCAACCTTCGA
CATCTGTTTTTATCGCCTAAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTTGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTCCAAAGTA
GCGTCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTCATAAATACAGAAGGTGAGCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTTTCATGCGCTTTGC
TGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTTGCTGCGGGTTCTTACGATGTACG
CTACTTGTGTTGTTCCCTCTTCTTCAAGTTTGAAGGTGAACGCACTTTGCTGAAGTTCCTTCTCTCCAAATTCGAAGGTTCATATGCGCTTCGCTGGAGTTCCTTCTCTC
CAAATTCGAAGGTTCTCATGCGCTTTGCTGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCGTGTGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTAACGCT
GCTTCTGCTTCCTCACGTCGCTTCACTGCAGTTCCTTGTTCCTTCTCTCCAAGTTTGAAAGTTCTCACGTTGCTTCGTTGTTATTCATTCTCTAAATTCGAAGGTTCTCA
CGCTACGTTGTTCGAAGGTGCTTCCTCTTATACTGCATTGCATCACTGTTCCTTCAACAAGTTCGAAGAAAGACGTGGCAGCGGCAAAAGTCCAAGGAGCACGTCATATC
TTTGTACTAATGCTGGAAGATGTGGCGGCGACAAAAGTCCAAGGAGCACGTCATGTCCTTGTACTCATGGCGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGGACGTCA
TATCCTTGTACTAATGCCGAAAGATGTTGCGGCGGCAAAAGTTTAAGGAGCACGTCATGTCCTTATACTCATGCCGAAAGACATGGCGGCAGTAAAAGTCCAAGGAGCAC
GTCATATCCTTGTACTCATGCCGAAAGACGTGGCGGCAACAAAAGTTCAAGGAGCACGTCATGTCCTTGTACTCATGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGA
CATGTCCCAAAGTAAGGAACATGTCCCTGTACTCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCGAAGCCTAAGTGTCGACATCGAAGAAAAGTCAACCTTCGA
CATCTGTTTTTATCGCCTAAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTTGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTCCAAAGTA
GCGTCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTCATAAATACAGAAGGTGAGCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTTTCATGCGCTTTGC
TGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTTGCTGCGGGTTCTTACGATGTACG
CTACTTGTGTTGTTCCCTCTTCTTCAAGTTTGAAGGTGAACGCACTTTGCTGAAGTTCCTTCTCTCCAAATTCGAAGGTTCATATGCGCTTCGCTGGAGTTCCTTCTCTC
CAAATTCGAAGGTTCTCATGCGCTTTGCTGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCGTGTGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTAACGCT
GCTTCTGCTTCCTCACGTCGCTTCACTGCAGTTCCTTGTTCCTTCTCTCCAAGTTTGAAAGTTCTCACGTTGCTTCGTTGTTATTCATTCTCTAAATTCGAAGGTTCTCA
CGCTACGTTGTTCGAAGGTGCTTCCTCTTATACTGCATTGCATCACTGTTCCTTCAACAAGTTCGAAGAAAGACGTGGCAGCGGCAAAAGTCCAAGGAGCACGTCATATC
TTTGTACTAATGCTGGAAGATGTGGCGGCGACAAAAGTCCAAGGAGCACGTCATGTCCTTGTACTCATGGCGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGGACGTCA
TATCCTTGTACTAATGCCGAAAGATGTTGCGGCGGCAAAAGTTTAAGGAGCACGTCATGTCCTTATACTCATGCCGAAAGACATGGCGGCAGTAAAAGTCCAAGGAGCAC
GTCATATCCTTGTACTCATGCCGAAAGACGTGGCGGCAACAAAAGTTCAAGGAGCACGTCATGTCCTTGTACTCATGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGA
CATGTCCCAAAGTAAGGAACATGTCCCTGTACTCATGCTGA
Protein sequenceShow/hide protein sequence
MSMAATKEENQCSMSTFTRPSAFRSLSVDIEEKSTFDICFYRLKVTSDQPKRKMDNFEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGERASLEFLLSKFEGFHALC
CTSFSPNSKVLMCFAVVPSLQVQRFSRCFAAGSYDVRYLCCSLFFKFEGERTLLKFLLSKFEGSYALRWSSFSPNSKVLMRFAALPSLQIRRFSCVSLQFLLPKFEGSNA
ASASSRRFTAVPCSFSPSLKVLTLLRCYSFSKFEGSHATLFEGASSYTALHHCSFNKFEERRGSGKSPRSTSYLCTNAGRCGGDKSPRSTSCPCTHGERRGGGKSPRRTS
YPCTNAERCCGGKSLRSTSCPYTHAERHGGSKSPRSTSYPCTHAERRGGNKSSRSTSCPCTHAERRGGGTSPRTCPKVRNMSLYSC