CuGenDBv2

Gene ID	Lag0011519
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr1:26975050..26980658
RNA-Seq Expression	Lag0011519
Synteny	Lag0011519
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

8.7e-49

87.61

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Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-48

86.73

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Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWL+KFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

KAA0037260.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

3.3e-48

87.61

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Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEATKEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEP NHKRGKHIERKY LIREIVQ G+VIVTKIASEHNI DPF KTL+AKV 
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

8.7e-49

87.61

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

8.7e-49

87.61

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

9.4e-49

86.73

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWL+KFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

A0A5A7TKM4 Gag/pol protein

4.2e-49

87.61

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Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

A0A5A7TZD0 Gag/pol protein

4.2e-49

87.61

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

A0A5A7UYE8 Gag/pol protein

4.2e-49

87.61

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHIERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVF
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

A0A5D3C8F4 Retrovirus-related pol polyprotein from transposon tnt 1-94

1.6e-48

87.61

Show/hide

Query:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF
        ME+EYVAACEATKEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEP NHKRGKHIERKY LIREIVQ G+VIVTKIASEHNI DPF KTL+AKV 
Subjt:  MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVF

Query:  EGHLQSLGLRDMY
        EGHL+SLGLRDMY
Subjt:  EGHLQSLGLRDMY

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.0e-12

37.04

Show/hide

Query:  ESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFE
        E+EY+A  EA +EA+WL+  L  + +   +  PI +Y D  G ++ +  P  HKR KHI+ KY+  RE VQ+  + +  I +E+ + D F K L A  F 
Subjt:  ESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFE

Query:  GHLQSLGL
             LGL
Subjt:  GHLQSLGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.9e-10

37.25

Show/hide

Query:  ESEYVAACEATKEAVWLRKFL--IGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKV
        E+EY+AA E  KE +WL++FL  +GL           +YCD   A+  SK    H R KHI+ +Y+ IRE+V    + V KI++  N  D   K +    
Subjt:  ESEYVAACEATKEAVWLRKFL--IGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKV

Query:  FE
        FE
Subjt:  FE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAATCAGAGTATGTTGCTGCATGTGAGGCAACAAAGGAAGCAGTATGGCTACGGAAGTTCCTGATAGGTTTGGAAGTTGTTCCAAACATGAACCTCCCCATAACTTT
ATACTGTGATAAAAATGGGGCAGTAGCCAATTCCAAAGAGCCTCGCAACCACAAACGAGGCAAACACATCGAGAGGAAATATAACCTGATTCGGGAGATAGTGCAACACG
GAGAAGTGATTGTCACAAAGATCGCTTCAGAGCACAACATAGTTGATCCATTTCCGAAAACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTACAAAGCTTAGGTCTACGA
GATATGTATAACCTAGGGCAAGTGGGAGATATACAGGTGCATAGACTAATTCATGGGCACGGGTCCCAAGAGCAGTTCACTAACTTTGTTGCTCTGCATGACAGGTTGCT
CAAGGTTGATAGACAATTCAAGTTTGATGATGAATGTTTACAGAAGAAAGATAAGATTGTTCAGCTGATTTATTATGCAAGCAAGACACTTAATGAAGCTCAGATGAACT
ACATGGTTGAAGAGAGGCTGCAGATTCGAGAAGCGTTTGCTGATGAGCAATTATTGGCTGTTCGAGCAATCATGATCCCATGGTTTGTAGACTATGTAAATTACTTAGAC
AGTGGACTCAAACCTTCAGAAGCCATAGCTCAACAAATGAAGAAGTTTATACGTGATGTGAAGGATTATTATTGGAACGAACCATACTTGTACAAACATGGACCATATCC
GATACTCAGAAGATGTGTGATGGAAGAAGAAGTGTCACACATTTTAGAAGCATGCCACTCAGATCTATATGGAGGGCACTTTGCAAGCACATGGTGGCAATTGCTTACCA
TCCCCAGACGAATGGTTCCAGCAGAGCTCTTTAATAGGGAAATCAAAGCTATCCTGGAGAAAACAGTGGACCCTTCTCAAAAGGATTGGTCACTTCGTCTTGATGAAGCT
TTATGGGCACATAGAACCACATACAAAGCACCTTTAAACTTTAAACTTGGGGTGTTTCTTCTTCTTTCAAGAGTTTGA

mRNA sequence

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Protein sequence

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MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLR
DMYNLGQVGDIQVHRLIHGHGSQEQFTNFVALHDRLLKVDRQFKFDDECLQKKDKIVQLIYYASKTLNEAQMNYMVEERLQIREAFADEQLLAVRAIMIPWFVDYVNYLD
SGLKPSEAIAQQMKKFIRDVKDYYWNEPYLYKHGPYPILRRCVMEEEVSHILEACHSDLYGGHFASTWWQLLTIPRRMVPAELFNREIKAILEKTVDPSQKDWSLRLDEA
LWAHRTTYKAPLNFKLGVFLLLSRV

Lag0011519 (gene) of Sponge gourd (AG-4) v1 genome