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Lag0011546 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011546
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr1:27535203..27535625
RNA-Seq ExpressionLag0011546
SyntenyLag0011546
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575615.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6194.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

KAG7014158.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-6194.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

XP_022148858.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia]3.0e-6194.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMD +GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAHVMLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

XP_022953157.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata]1.8e-6194.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

XP_023522861.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucurbita pepo subsp. pepo]1.5e-6093.55Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVF EMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

TrEMBL top hitse value%identityAlignment
A0A0A0KBR1 Uncharacterized protein7.2e-6191.13Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCR+ W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHA+GISEGVDFASRVFHEMKEMGCKPNVVTCNT+I
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLK+DC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

A0A1S3CFA1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial2.1e-6090.32Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCR+ W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMK+KGMKLDVVAYNTVIHA+GISEGVDFASRVFHEMKEMGCKPNVVTCNT+I
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLK+DC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

A0A5A7UVK9 Pentatricopeptide repeat-containing protein6.1e-6089.52Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCR+ W EMDK+GVRKDLHSYSIYMDI+CKSGKPWK VKLYKEMK+KGMKLDVVAYNTVIHA+GISEGVDFASRVFHEMKEMGCKPNVVTCNT+I
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLK+DC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

A0A6J1D599 pentatricopeptide repeat-containing protein At1g80550, mitochondrial1.5e-6194.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMD +GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAHVMLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

A0A6J1GNU3 pentatricopeptide repeat-containing protein At1g80550, mitochondrial8.5e-6294.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        MG WSKCRE W EMDK+GVRKDLHSYSIYMDIQCKSGKPWK VKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KLF ENGRFKDAH+MLDQMLKKDC
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

SwissProt top hitse value%identityAlignment
Q0WPZ6 Pentatricopeptide repeat-containing protein At2g171402.4e-1333.61Show/hide
Query:  GRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIK
        GR+++ + L+ EM  E ++ D  +Y+I++   CK GK     ++ K+M+KKG    +  YN++I  +GI   +     +  EMKE G  PN+ T NT I+
Subjt:  GRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIK

Query:  LFYENGRFKDAHVMLDQMLKKD
           E  + +DA  +LD+M++K+
Subjt:  LFYENGRFKDAHVMLDQMLKKD

Q3E9F0 Pentatricopeptide repeat-containing protein At5g184754.6e-1231.78Show/hide
Query:  MDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDAH
        M K G   ++++YS  M+  CK GK  +  + + E+KK G+KLD V Y T+++    +   D A ++  EMK   C+ + +T N I++     GR ++A 
Subjt:  MDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDAH

Query:  VMLDQMLKKDCH-RMSSHIIVFWGIVVNG
         MLDQ   +  H    S+ I+   +  NG
Subjt:  VMLDQMLKKDCH-RMSSHIIVFWGIVVNG

Q9FZ19 Putative pentatricopeptide repeat-containing protein At1g024205.4e-1336.36Show/hide
Query:  EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDA
        EM  +G++ D+ +Y+  +D+ CK  +  K  KL  +M+++    DV+ Y TVI  +G+    D A  V  EMKE GC P+V   N  I+ F    R  DA
Subjt:  EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDA

Query:  HVMLDQMLKK
          ++D+M+KK
Subjt:  HVMLDQMLKK

Q9M8M3 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial1.2e-4469.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        +G W KC+E W +MD EGV KDL SYSIYMDI CKSGKPWK VKLYKEMK + MKLDVVAYNTVI AIG S+GV+F  RVF EM+E GC+PNV T NTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KL  E+GR +DA+ MLD+M K+ C
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

Q9ZU29 Pentatricopeptide repeat-containing protein At2g013903.2e-1330.51Show/hide
Query:  WEMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKD
        W    +G + D  +Y+  +DI  ++G+   +  ++  MK+KG+ +D V Y ++IH +  S  VD A R++ EM++ GC+P VV+    +K+ + +GR ++
Subjt:  WEMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKD

Query:  AHVMLDQMLKK----DCH
        A  +  +ML+     +CH
Subjt:  AHVMLDQMLKK----DCH

Arabidopsis top hitse value%identityAlignment
AT1G02420.1 Pentatricopeptide repeat (PPR) superfamily protein3.8e-1436.36Show/hide
Query:  EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDA
        EM  +G++ D+ +Y+  +D+ CK  +  K  KL  +M+++    DV+ Y TVI  +G+    D A  V  EMKE GC P+V   N  I+ F    R  DA
Subjt:  EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKDA

Query:  HVMLDQMLKK
          ++D+M+KK
Subjt:  HVMLDQMLKK

AT1G51965.1 ABA Overly-Sensitive 53.2e-1330.83Show/hide
Query:  SKCRELWE-MDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFY
        S   +L+E M K+G   D+ +Y+I +    + G+  + + +++E+++   K D+++YN++I+ +G +  VD A   F EM+E G  P+VVT +T+++ F 
Subjt:  SKCRELWE-MDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFY

Query:  ENGRFKDAHVMLDQMLKKDC
        +  R + A+ + ++ML K C
Subjt:  ENGRFKDAHVMLDQMLKKDC

AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein8.5e-4669.35Show/hide
Query:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII
        +G W KC+E W +MD EGV KDL SYSIYMDI CKSGKPWK VKLYKEMK + MKLDVVAYNTVI AIG S+GV+F  RVF EM+E GC+PNV T NTII
Subjt:  MGRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTII

Query:  KLFYENGRFKDAHVMLDQMLKKDC
        KL  E+GR +DA+ MLD+M K+ C
Subjt:  KLFYENGRFKDAHVMLDQMLKKDC

AT2G01390.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1430.51Show/hide
Query:  WEMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKD
        W    +G + D  +Y+  +DI  ++G+   +  ++  MK+KG+ +D V Y ++IH +  S  VD A R++ EM++ GC+P VV+    +K+ + +GR ++
Subjt:  WEMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKD

Query:  AHVMLDQMLKK----DCH
        A  +  +ML+     +CH
Subjt:  AHVMLDQMLKK----DCH

AT2G17140.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-1433.61Show/hide
Query:  GRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIK
        GR+++ + L+ EM  E ++ D  +Y+I++   CK GK     ++ K+M+KKG    +  YN++I  +GI   +     +  EMKE G  PN+ T NT I+
Subjt:  GRWSKCRELW-EMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIK

Query:  LFYENGRFKDAHVMLDQMLKKD
           E  + +DA  +LD+M++K+
Subjt:  LFYENGRFKDAHVMLDQMLKKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGGTGGAGTAAGTGTAGAGAGTTATGGGAAATGGATAAGGAGGGCGTTCGTAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGCAAGAGTGGGAA
GCCATGGAAGGTTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTG
ATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGATGTAAGCCTAATGTCGTGACTTGCAATACTATTATTAAGCTATTTTATGAGAATGGAAGATTCAAGGAT
GCCCATGTGATGCTTGATCAAATGCTTAAGAAGGACTGTCACCGAATGTCATCACATATCATTGTTTTTTGGGGAATTGTAGTAAATGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGGTGGAGTAAGTGTAGAGAGTTATGGGAAATGGATAAGGAGGGCGTTCGTAAGGATTTGCATTCGTATTCGATATATATGGATATACAATGCAAGAGTGGGAA
GCCATGGAAGGTTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAATTGGATGTAGTCGCATACAATACGGTAATTCATGCCATTGGGATTTCAGAAGGCGTTG
ATTTTGCCAGCCGGGTGTTTCATGAGATGAAGGAAATGGGATGTAAGCCTAATGTCGTGACTTGCAATACTATTATTAAGCTATTTTATGAGAATGGAAGATTCAAGGAT
GCCCATGTGATGCTTGATCAAATGCTTAAGAAGGACTGTCACCGAATGTCATCACATATCATTGTTTTTTGGGGAATTGTAGTAAATGGCTAG
Protein sequenceShow/hide protein sequence
MGRWSKCRELWEMDKEGVRKDLHSYSIYMDIQCKSGKPWKVVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFYENGRFKD
AHVMLDQMLKKDCHRMSSHIIVFWGIVVNG