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Lag0011548 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011548
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:27557771..27558472
RNA-Seq ExpressionLag0011548
SyntenyLag0011548
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]7.0e-4753.93Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   + + S K+EF+E EA  + H HNDALV+TL IANAKVHRIL+DGGSS D+ S  A+ AM LG + L+ SLTPL+GFG E+I P+G IEL +TF  
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDRRVQT
           ++TRM++FLVVD   +YN IL RPT+H LRA+ STY Q +KFPT  GVG + G Q++SRECY+ +++  D+   T
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDRRVQT

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]5.6e-4452.3Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   ++E   K+EF E E   I H HNDALV+ L IANAKVH IL+DGGSS D++S  A+  M LG   L+ S  PLVGFG E + P G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  ++T+M++FLVVD   + NAILGRPT+H L+A+ S Y Q +KFPT  G+G + G Q++SRECY+ ++K  D+
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]1.1e-4454.02Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   +      +EF+E EA  + H HNDALV+TL IAN KVHRIL+DGGSSAD++S  A+ AM LG   L+ S  PLVGFG E++   G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  +VT+M++FLVV+   +YNAILGRPT+H L+A+ STY Q  KFPT  GVG + G Q++SRECY  ++++ DR
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]4.7e-4352.35Show/hide
Query:  LLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGEGLHT
        +++E   KLEF+E EA  + H HNDALV+TL IANAKVHRIL+DGGSS  ++S  A+ AM LG   L+ S  PLVGFG E++ P G IEL V FG G  +
Subjt:  LLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGEGLHT

Query:  VTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        + +M++FLVV    +YN ILGRP +H L+ + STY Q +KFPT  G+G + G Q++ RECY  ++K  DR
Subjt:  VTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

XP_022158687.1 uncharacterized protein LOC111025147 [Momordica charantia]2.7e-4654.02Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   + + S  +EF+E EA  + H HNDALV+TL IAN KVHRIL+DGGSSAD++S   +  M LG   L+ S  PL+GFGRE++ P G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  +VT+M++FLVVD   +YNAILGR T+H L+A+ STY Q +KFPT  GVG + G Q++SRECY+ +++  DR
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

TrEMBL top hitse value%identityAlignment
A0A6J1CZ14 uncharacterized protein LOC1110159013.4e-4753.93Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   + + S K+EF+E EA  + H HNDALV+TL IANAKVHRIL+DGGSS D+ S  A+ AM LG + L+ SLTPL+GFG E+I P+G IEL +TF  
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDRRVQT
           ++TRM++FLVVD   +YN IL RPT+H LRA+ STY Q +KFPT  GVG + G Q++SRECY+ +++  D+   T
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDRRVQT

A0A6J1DAK4 uncharacterized protein LOC1110189022.7e-4452.3Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   ++E   K+EF E E   I H HNDALV+ L IANAKVH IL+DGGSS D++S  A+  M LG   L+ S  PLVGFG E + P G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  ++T+M++FLVVD   + NAILGRPT+H L+A+ S Y Q +KFPT  G+G + G Q++SRECY+ ++K  D+
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

A0A6J1DP33 uncharacterized protein LOC1110228862.3e-4352.35Show/hide
Query:  LLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGEGLHT
        +++E   KLEF+E EA  + H HNDALV+TL IANAKVHRIL+DGGSS  ++S  A+ AM LG   L+ S  PLVGFG E++ P G IEL V FG G  +
Subjt:  LLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGEGLHT

Query:  VTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        + +M++FLVV    +YN ILGRP +H L+ + STY Q +KFPT  G+G + G Q++ RECY  ++K  DR
Subjt:  VTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

A0A6J1DQY2 uncharacterized protein LOC1110223215.4e-4554.02Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   +      +EF+E EA  + H HNDALV+TL IAN KVHRIL+DGGSSAD++S  A+ AM LG   L+ S  PLVGFG E++   G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  +VT+M++FLVV+   +YNAILGRPT+H L+A+ STY Q  KFPT  GVG + G Q++SRECY  ++++ DR
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

A0A6J1DXV4 uncharacterized protein LOC1110251471.3e-4654.02Show/hide
Query:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE
        +Y   + + S  +EF+E EA  + H HNDALV+TL IAN KVHRIL+DGGSSAD++S   +  M LG   L+ S  PL+GFGRE++ P G IEL VTFG 
Subjt:  MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGE

Query:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR
        G  +VT+M++FLVVD   +YNAILGR T+H L+A+ STY Q +KFPT  GVG + G Q++SRECY+ +++  DR
Subjt:  GLHTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCGCTCCTACTCGATGAAAACTCACCAAAATTGGAGTTTACAGAGAAGGAGGCCGTGGGAATACACCATTCACACAACGACGCACTGGTGGTTACCTTAACGAT
TGCCAATGCAAAAGTTCACCGAATCCTCATTGATGGGGGAAGTTCCGCTGATGTGCTCTCAGCCGCTGCGTTCGACGCCATGAAGCTGGGGAGCGATCGCCTGAGACCGA
GTCTCACGCCGCTAGTAGGTTTCGGCAGGGAAAAAATAAGCCCGAGAGGAAGCATTGAACTGTCAGTGACGTTTGGAGAAGGGTTGCATACAGTAACGAGGATGATCAAC
TTTCTGGTAGTAGACTGTGTCCCGGCATATAATGCCATCCTGGGACGACCCACCCTACATGGACTCAGAGCTGTGGCCTCAACCTACCAACAGGTCCTGAAATTCCCAAC
TGAAGAAGGGGTAGGAGCAGTATATGGTGTACAGAAGATGTCGAGGGAGTGCTACTTTATGGCACTCAAGAACGTGGACAGAAGAGTCCAGACAAAGTTAGCTTCGGAGG
ATGGCCAAGGCCGAACATTTGAGGGAGCAAACTATTCCCTTCCAATGGAGCATTGGTTCCTTTCCATTATGTTTTTCAGTCCATCGGACCATGTTCAGTTTTCTTTTATG
TTAATTTATTCAGAATGTACTCAGTTGATTTATTTGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCGCTCCTACTCGATGAAAACTCACCAAAATTGGAGTTTACAGAGAAGGAGGCCGTGGGAATACACCATTCACACAACGACGCACTGGTGGTTACCTTAACGAT
TGCCAATGCAAAAGTTCACCGAATCCTCATTGATGGGGGAAGTTCCGCTGATGTGCTCTCAGCCGCTGCGTTCGACGCCATGAAGCTGGGGAGCGATCGCCTGAGACCGA
GTCTCACGCCGCTAGTAGGTTTCGGCAGGGAAAAAATAAGCCCGAGAGGAAGCATTGAACTGTCAGTGACGTTTGGAGAAGGGTTGCATACAGTAACGAGGATGATCAAC
TTTCTGGTAGTAGACTGTGTCCCGGCATATAATGCCATCCTGGGACGACCCACCCTACATGGACTCAGAGCTGTGGCCTCAACCTACCAACAGGTCCTGAAATTCCCAAC
TGAAGAAGGGGTAGGAGCAGTATATGGTGTACAGAAGATGTCGAGGGAGTGCTACTTTATGGCACTCAAGAACGTGGACAGAAGAGTCCAGACAAAGTTAGCTTCGGAGG
ATGGCCAAGGCCGAACATTTGAGGGAGCAAACTATTCCCTTCCAATGGAGCATTGGTTCCTTTCCATTATGTTTTTCAGTCCATCGGACCATGTTCAGTTTTCTTTTATG
TTAATTTATTCAGAATGTACTCAGTTGATTTATTTGAAATAA
Protein sequenceShow/hide protein sequence
MYSLLLDENSPKLEFTEKEAVGIHHSHNDALVVTLTIANAKVHRILIDGGSSADVLSAAAFDAMKLGSDRLRPSLTPLVGFGREKISPRGSIELSVTFGEGLHTVTRMIN
FLVVDCVPAYNAILGRPTLHGLRAVASTYQQVLKFPTEEGVGAVYGVQKMSRECYFMALKNVDRRVQTKLASEDGQGRTFEGANYSLPMEHWFLSIMFFSPSDHVQFSFM
LIYSECTQLIYLK