CuGenDBv2

Gene ID	Lag0011554
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Replication factor C subunit 1
Genome location	chr1:27587512..27596410
RNA-Seq Expression	Lag0011554
Synteny	Lag0011554
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0005634 - nucleus (cellular component) GO:0005663 - DNA replication factor C complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003689 - DNA clamp loader activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR003593 - AAA+ ATPase domain IPR003959 - ATPase, AAA-type, core IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605957.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

8.1e-87

80.45

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNAN+IKELI N SL  + DQPKHPKTVLIMDEVDGMSAGDRGGVADLIA IK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

XP_022957868.1 replication factor C subunit 1 isoform X1 [Cucurbita moschata]

1.4e-86

80.45

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNAN+IKELI N SL  + DQPK PKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

XP_022957869.1 replication factor C subunit 1 isoform X2 [Cucurbita moschata]

1.4e-86

80.45

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNAN+IKELI N SL  + DQPK PKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

XP_022995017.1 replication factor C subunit 1 isoform X1 [Cucurbita maxima]

7.4e-88

81.36

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNANSIKELI N SL  + DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

XP_022995018.1 replication factor C subunit 1 isoform X2 [Cucurbita maxima]

7.4e-88

81.36

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNANSIKELI N SL  + DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DHR4 Replication factor C subunit 1

2.6e-86

82.46

Show/hide

Query:  TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSK
        TR D TA ASPAKQKSRTVE SSL TWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENF D  SKKKGKKLNDS AKK VLLCGGP IGKTTSAKLVS+
Subjt:  TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSK

Query:  MLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYL
        MLGY+AIEVNASDNR K+ AKIQKGISGSNANSIKELI NESL  + +QPK PKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICICNDR      
Subjt:  MLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYL

Query:  ILVTLCDMARF
         LV  C +  F
Subjt:  ILVTLCDMARF

A0A6J1H1H3 Replication factor C subunit 1

6.7e-87

80.45

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNAN+IKELI N SL  + DQPK PKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

A0A6J1H397 Replication factor C subunit 1

6.7e-87

80.45

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNAN+IKELI N SL  + DQPK PKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

A0A6J1JXK0 Replication factor C subunit 1

3.6e-88

81.36

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNANSIKELI N SL  + DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

A0A6J1K6Q0 Replication factor C subunit 1

3.6e-88

81.36

Show/hide

Query:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK
        KSS  + A T  DL+A ASPAKQK RTVE SSL TWTEKY+PKV NDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK +LLCGGP IGK
Subjt:  KSSFNLDA-TRIDLTASASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGK

Query:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC
        TTSAKLVS+MLGYEAIEVNASDNR K+ AKIQKGISGSNANSIKELI N SL  + DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIK SKIPIICIC
Subjt:  TTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICIC

Query:  NDRDKAGYLILVTLCDMARF
        NDR       LV  C +  F
Subjt:  NDRDKAGYLILVTLCDMARF

SwissProt top hits

e value

%identity

Alignment

O60182 Replication factor C subunit 1

2.0e-27

43.58

Show/hide

Query:  SRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNR
        S   ES     WT KY P    DI GN+ +V++L  WL  +++N     +K     L   G  K VLL G P IGKTT+A LV+K+ GY+ +E+NASD R
Subjt:  SRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNR

Query:  DKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR
         K     Q     +++ S+    G ++  + M +    + VLIMDE+DGMS+GDRGGV  L   IK S IPIICICNDR
Subjt:  DKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR

P35600 Replication factor C subunit 1

1.1e-25

34.94

Show/hide

Query:  VRKIITLAEKIKALEEDKEKLKILLSTAQGEGMLLLDQIGYLVEEEEIEK-RAGEKGK-GKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKS---
        +R+   +A+++K  EE K   K   S  +G+  +   +     +E+E  K + GEK    K K    ++S K       D   + L     P+ QK    
Subjt:  VRKIITLAEKIKALEEDKEKLKILLSTAQGEGMLLLDQIGYLVEEEEIEK-RAGEKGK-GKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKS---

Query:  --RTVESSSL----ITWTEKYRPKVSNDIIGN---QSLVKQLHDWLAHWNENFLDGGSKKK----GKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLG
          RT +  +L    + W +K++P    +I+G     S V +L +WL+ W  N  DG  K +      K +D    K  LL G P IGKTT+A LV K LG
Subjt:  --RTVESSSL----ITWTEKYRPKVSNDIIGN---QSLVKQLHDWLAHWNENFLDGGSKKK----GKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLG

Query:  YEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQ---LKMDQPKHPKTVLIMDEVDGMSAG-DRGGVADLIASIKISKIPIICICNDRDKAGY
        ++A+E NASD R K   K          + +  L+ N+SL        Q    K VLIMDEVDGM+   DRGG+ +LIA IK S IPIIC+CNDR+    
Subjt:  YEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQ---LKMDQPKHPKTVLIMDEVDGMSAG-DRGGVADLIASIKISKIPIICICNDRDKAGY

Query:  LILVTLCDMARF
          LV  C   RF
Subjt:  LILVTLCDMARF

Q2R2B4 Replication factor C subunit 1

1.4e-65

65.69

Show/hide

Query:  SASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAI
        SAS   QK   V+  SL  WTEKYRPKV NDI+GNQS+VKQLHDWL  W + FL  G K KGKK  DSGAKK VLL G P IGKTT+AK+VS+MLG +AI
Subjt:  SASPAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAI

Query:  EVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLCD
        EVNASD+R KA +KI+KG+ GS +NSIKELI N +L    ++ K PK VL+MDEVDGMSAGDRGGVADLIASIK+SKIPIICICNDR       LV  C 
Subjt:  EVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLCD

Query:  MARF
        +  F
Subjt:  MARF

Q54MH9 Probable replication factor C subunit 1

8.9e-28

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Query:  GKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKSRTVESSSL--------ITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGK
        G G  ++S+  +   SS     T    T ++SP    +  +   S+        I W EKYRPKV  DI+GN  + ++   WL  WN             
Subjt:  GKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKSRTVESSSL--------ITWTEKYRPKVSNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGK

Query:  KLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISG-SNANSIKELIG--NESLQLKMDQPKHPKTVLIMDEVDGMSA
           D+  K  VLL G P IGKT++A L+ K  G+EAIE+NASD R K  ++I++ +SG S+  +I +  G  N+     +   K  KT +I+DE+DG S 
Subjt:  KLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISG-SNANSIKELIG--NESLQLKMDQPKHPKTVLIMDEVDGMSA

Query:  -GDRGGVADLIASIKISKIPIICICND
          DRGG+A++I  IK SK+P IC+CND
Subjt:  -GDRGGVADLIASIKISKIPIICICND

Q9C587 Replication factor C subunit 1

9.4e-70

58.82

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Query:  YLVEEEEIEKRAGEKGKGKGKPSTSNSSVK--C---KSSFNLDATRIDLTASAS-----PAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHD
        +L E+   +     K   K  P  SN   +  C   K+S   + TR    A +S     PAK K++ +E+S  + WTEKYRPKV N+I+GNQSLV QLH+
Subjt:  YLVEEEEIEKRAGEKGKGKGKPSTSNSSVK--C---KSSFNLDATRIDLTASAS-----PAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHD

Query:  WLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPK
        WL+HW++ F   GSK KGKKLND+G+KK VLL G P IGKTTSAKLVS+MLG++A+EVNASD+R KA + I KGI GSNANS+KEL+ NE++    D+ K
Subjt:  WLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPK

Query:  HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLC
        HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR       LV  C
Subjt:  HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLC

Arabidopsis top hits

e value

%identity

Alignment

AT1G04730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

5.6e-09

29.41

Show/hide

Query:  KGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSA
        K  KL     +K++LLCG P +GKTT A + +K  GY  +E+NASD R              +A++I+  I +      +     PK  L++DE+DG + 
Subjt:  KGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPKHPKTVLIMDEVDGMSA

Query:  GDRGGVADLIASIKISK---------------------------IPIICICND
        GD  G  D+I  + +++                            P+ICICND
Subjt:  GDRGGVADLIASIKISK---------------------------IPIICICND

AT5G22010.1 replication factor C1

6.7e-71

58.82

Show/hide

Query:  YLVEEEEIEKRAGEKGKGKGKPSTSNSSVK--C---KSSFNLDATRIDLTASAS-----PAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHD
        +L E+   +     K   K  P  SN   +  C   K+S   + TR    A +S     PAK K++ +E+S  + WTEKYRPKV N+I+GNQSLV QLH+
Subjt:  YLVEEEEIEKRAGEKGKGKGKPSTSNSSVK--C---KSSFNLDATRIDLTASAS-----PAKQKSRTVESSSLITWTEKYRPKVSNDIIGNQSLVKQLHD

Query:  WLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPK
        WL+HW++ F   GSK KGKKLND+G+KK VLL G P IGKTTSAKLVS+MLG++A+EVNASD+R KA + I KGI GSNANS+KEL+ NE++    D+ K
Subjt:  WLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQLKMDQPK

Query:  HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLC
        HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR       LV  C
Subjt:  HPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGGATGAAGATAGAGATGAGGAAACCCAGACCAGACCAGACGTAGACGGAAGAAGATTGCTGTCGAACGATAAGAGGAAGAAAAATAACTTCTACAGGAAGAATAT
TGCCGCCGGAATCCCAGTTTGGACAGTTCCCAGATGTTTTGAAAAAGGAAAGAAAGTCAAACGCCCTAGGGTTCCTCCTCGTAGTTCTCCTCTTCCTCACCAGGGTCCAG
CTCATCAACCCGCCACAGCTCTTGTTTCTCCCTTCTTCAACCTTCTTCTTCAACCTTCAGCCGTCACAACTGTCGTTCCTCCCTTCTTCAACCTTCGGGTGCGAAAGATT
ATAACTCTGGCGGAAAAAATCAAGGCTCTCGAGGAAGACAAGGAAAAACTCAAGATCCTCCTCTCCACAGCTCAAGGGGAGGGCATGTTGTTGTTGGATCAAATCGGTTA
TCTCGTGGAGGAGGAAGAAATAGAGAAACGTGCTGGAGAGAAAGGGAAAGGGAAAGGGAAACCATCGACTAGCAATTCCTCTGTGAAGTGCAAGAGTTCCTTTAATTTGG
ATGCAACACGCATAGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGTCGAACAGTTGAATCTTCATCCCTTATAACATGGACAGAAAAATATAGGCCAAAGGTT
TCAAATGACATTATAGGCAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCT
CAATGATTCTGGTGCCAAAAAAGTTGTCTTGTTATGTGGAGGTCCTCGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAGAGG
TAAATGCCAGCGATAATCGGGATAAAGCATATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCGGCAATGAATCTTTGCAATTA
AAAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAAT
CTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATATGGCCCGCTTTGTATTCGATACAGACGTATTGA
TCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGGATCCCGCCCTCTCATTGGCCCGAGAGGGAC
TTTCTGTTTACTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGCCAGAGAACGAAATTAAATTGCGAATCGGTCCAATTGCTTCCGCTGT
AACGGAATTGGGAATTCCAATCCTTCAATTGGTTTCAGAGCCTGTTGTTTTGGGCATTTTGTTGCAAATTAGTGTTGTTGGAGGTGAGCAGTTCAGGCGTGCAGCAGTCC
GTGCGGTTATTTTAAAATGGTCAGTTTTAAGAGCCACGTGTCATTGTACCATAGGCGTTCGGCTGGAGCATGCGTCAGACAGTTCGGCAGTTCGAGCATTATGGAGTGCG
GTTCGACCCGATTCACCGAGTTTGATCGGTCTCACTGGTTCTACGCGTTTATGCGGCCTGGACGTGTTTGGCCGGTTCATGTTGTTTTCGGTCCGTCCATTTTCTTGCCG
GTTCGAAGGGTTTGAACGCGGTTCGAGGCTGTTTGGGCTAGATCACAGCAAAATAGAACCTGTAATAGATTAA

mRNA sequence

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Protein sequence

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MQDEDRDEETQTRPDVDGRRLLSNDKRKKNNFYRKNIAAGIPVWTVPRCFEKGKKVKRPRVPPRSSPLPHQGPAHQPATALVSPFFNLLLQPSAVTTVVPPFFNLRVRKI
ITLAEKIKALEEDKEKLKILLSTAQGEGMLLLDQIGYLVEEEEIEKRAGEKGKGKGKPSTSNSSVKCKSSFNLDATRIDLTASASPAKQKSRTVESSSLITWTEKYRPKV
SNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVLLCGGPRIGKTTSAKLVSKMLGYEAIEVNASDNRDKAYAKIQKGISGSNANSIKELIGNESLQL
KMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRDKAGYLILVTLCDMARFVFDTDVLIQGVHVGDMRAGVSYAMSLHKTGPRNRIPPSHWPERD
FLFTGWTINRLFIRGALVLKEPENEIKLRIGPIASAVTELGIPILQLVSEPVVLGILLQISVVGGEQFRRAAVRAVILKWSVLRATCHCTIGVRLEHASDSSAVRALWSA
VRPDSPSLIGLTGSTRLCGLDVFGRFMLFSVRPFSCRFEGFERGSRLFGLDHSKIEPVID

Lag0011554 (gene) of Sponge gourd (AG-4) v1 genome