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Lag0011560 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011560
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:27765468..27766049
RNA-Seq ExpressionLag0011560
SyntenyLag0011560
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]5.3e-1635.76Show/hide
Query:  QTRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETEL
        Q +W P  ++  KLN DA+ S + Q+ G G I+RD +G  L  G++      +VS  E +AI  GL+  +Q +++ L VESDC +VV LLN      TE+
Subjt:  QTRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETEL

Query:  LFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFP
         +++ D +      +    S IPR  N  AH LA  A   + + +WV +FP
Subjt:  LFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFP

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.7e-1935.97Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF
        +W P   + WKLN +A+W  +   GG GWILRD +G  + A  R       +++LE  AI EGLR I Q     + +ESD L+ + LL+ +  ++TE+++
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF

Query:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN
        L+++   ++    I S+ HI R  N++AH LA +A E +
Subjt:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.7e-2037.25Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDI-HQTTTTWLRVESDCLQVVRLLNGEDHEETELL
        +W P P   W LN DASWS+   RGG GWI+R W G  ++AG R       V  LE  AI+EGLR++ +      L +E+D  +V  LLN +  + T+  
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDI-HQTTTTWLRVESDCLQVVRLLNGEDHEETELL

Query:  FLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL
        +++++  +L     I + + + R  N  AH LA +A    +S IWV+ FP WL
Subjt:  FLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.4e-1835.37Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGL--------RDIHQTTTTWLRVESDCLQVVRLLNGED
        RW P   + WKLN DA+W  +   GG GWILRD +G  + A  R       +++LE  AI EGL        R I Q     + +ESD L+ + LL+ + 
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGL--------RDIHQTTTTWLRVESDCLQVVRLLNGED

Query:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN
         ++TE+++L+++   ++   +I S+ HI R  N++AH LA +A E +
Subjt:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN

XP_024033483.1 uncharacterized protein LOC112095606 [Citrus clementina]2.6e-1532.92Show/hide
Query:  SPQTTVQTRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGED
        S Q   Q  W P      K+N DA+ S E    G G I+RD +G  + A ++       VS+ E +A+  GL+     +T  L VESD   VV L+N + 
Subjt:  SPQTTVQTRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGED

Query:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLL
           +E+ ++I + Q+L+    + SI++  R+ N +AH LA  A E+ ++ +W+ S+P  LL
Subjt:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.2e-1935.97Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF
        +W P   + WKLN +A+W  +   GG GWILRD +G  + A  R       +++LE  AI EGLR I Q     + +ESD L+ + LL+ +  ++TE+++
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF

Query:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN
        L+++   ++    I S+ HI R  N++AH LA +A E +
Subjt:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-2037.25Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDI-HQTTTTWLRVESDCLQVVRLLNGEDHEETELL
        +W P P   W LN DASWS+   RGG GWI+R W G  ++AG R       V  LE  AI+EGLR++ +      L +E+D  +V  LLN +  + T+  
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDI-HQTTTTWLRVESDCLQVVRLLNGEDHEETELL

Query:  FLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL
        +++++  +L     I + + + R  N  AH LA +A    +S IWV+ FP WL
Subjt:  FLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL

A0A6J1DSV1 uncharacterized protein LOC1110236083.6e-1835.37Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGL--------RDIHQTTTTWLRVESDCLQVVRLLNGED
        RW P   + WKLN DA+W  +   GG GWILRD +G  + A  R       +++LE  AI EGL        R I Q     + +ESD L+ + LL+ + 
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGL--------RDIHQTTTTWLRVESDCLQVVRLLNGED

Query:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN
         ++TE+++L+++   ++   +I S+ HI R  N++AH LA +A E +
Subjt:  HEETELLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEEN

A0A7J6FZ95 Uncharacterized protein1.3e-1530.19Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF
        +WI  P  C  +NCD + +      G G+I RDW+G  L+AG+  F     +   ET AI+E L+    T    L ++SDC  +V  +   D   + +  
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF

Query:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEAD
        L+   +  +      +  H+ R  N+ AH+L+ K      ++I+ +SFP WL S  +AD
Subjt:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEAD

A0A803PLN3 Uncharacterized protein1.7e-1532.28Show/hide
Query:  WIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFL
        WI  P  C  LNCDA+ +      G G+I R+W+G  L+AG+        V   E  AI+E L+    TT   L ++SDC  +V  +   D   + +  L
Subjt:  WIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFL

Query:  IKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEAD
        +   +  +      +I H+ R  N  AH+LA K      ++I+ +SFP WL S  +AD
Subjt:  IKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein5.9e-0527.16Show/hide
Query:  IPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFLIKD
        +P    K N DAS  E     G GW++R+ QGT L  G+  F         E  A+I  ++       T +  E D   V RL+N +        +L   
Subjt:  IPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFLIKD

Query:  AQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEADIGCVHHN
           + S    E I    R  NQ A  L  KA + +      N  P +L     + +G  H N
Subjt:  AQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEADIGCVHHN

AT3G09510.1 Ribonuclease H-like superfamily protein7.4e-0826.49Show/hide
Query:  WIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFL
        W   P    K N DA +  +      GWI+R+  GTP+  G    + +      ET+A++  L+       T + +E DC  ++ L+NG     + L   
Subjt:  WIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLFL

Query:  IKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL
        ++D     +         I R  N++AHVLA   C  +       S P WL
Subjt:  IKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL

AT4G29090.1 Ribonuclease H-like superfamily protein4.6e-1028.66Show/hide
Query:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF
        RW P P    K N DA+W+ + +R G GW+LR+ +G     G R       V   E +A+   +  + +    ++  ESD   ++ +LN  D     L  
Subjt:  RWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELLF

Query:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACE--ENDSKIWVNSFPEWLLSA
         I+D Q LLS         IPR  N +A  +A ++      D K++ +  P W  S+
Subjt:  LIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACE--ENDSKIWVNSFPEWLLSA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-0729.22Show/hide
Query:  TRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELL
        T+W P   D  K N DAS  E     G GWILR+ QGT +  G+  F         E   +I  ++  +      +  E D   + R++N +        
Subjt:  TRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETELL

Query:  FLIKDAQHLLSLRRIE-SISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL
        FL      + S   IE S  H  R  N  A  LA +A +EN      +S P +L
Subjt:  FLIKDAQHLLSLRRIE-SISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCGGATAATTCCCCCCAGACAACGGTGCAAACCAGATGGATTCCGATTCCTGAGGATTGCTGGAAACTCAATTGTGATGCGTCGTGGAGTGAAGAGTATCAACG
AGGCGGCTTCGGATGGATTCTTCGGGATTGGCAAGGAACACCATTAATGGCGGGTCTCCGTTGCTTCAGCTTGTCGTGGAAGGTCAGTTGGCTCGAAACCCAGGCGATTA
TTGAAGGTTTGCGTGATATACATCAGACGACAACTACTTGGCTCCGTGTGGAGAGCGATTGTCTTCAGGTTGTTCGACTGCTCAACGGCGAAGACCATGAAGAAACGGAA
CTGTTGTTTCTAATTAAAGATGCCCAACATCTTCTATCTTTGAGAAGAATAGAATCTATTTCTCATATACCCAGGGCTTATAATCAAATGGCCCATGTCTTGGCCCATAA
AGCTTGTGAAGAGAATGACTCTAAAATATGGGTCAATTCTTTTCCAGAATGGCTTCTATCTGCTAATGAAGCTGATATCGGTTGTGTACATCACAATTGTGGGGGTCCTG
TCCCACGTGTGAACAATTTTAATTTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCGGATAATTCCCCCCAGACAACGGTGCAAACCAGATGGATTCCGATTCCTGAGGATTGCTGGAAACTCAATTGTGATGCGTCGTGGAGTGAAGAGTATCAACG
AGGCGGCTTCGGATGGATTCTTCGGGATTGGCAAGGAACACCATTAATGGCGGGTCTCCGTTGCTTCAGCTTGTCGTGGAAGGTCAGTTGGCTCGAAACCCAGGCGATTA
TTGAAGGTTTGCGTGATATACATCAGACGACAACTACTTGGCTCCGTGTGGAGAGCGATTGTCTTCAGGTTGTTCGACTGCTCAACGGCGAAGACCATGAAGAAACGGAA
CTGTTGTTTCTAATTAAAGATGCCCAACATCTTCTATCTTTGAGAAGAATAGAATCTATTTCTCATATACCCAGGGCTTATAATCAAATGGCCCATGTCTTGGCCCATAA
AGCTTGTGAAGAGAATGACTCTAAAATATGGGTCAATTCTTTTCCAGAATGGCTTCTATCTGCTAATGAAGCTGATATCGGTTGTGTACATCACAATTGTGGGGGTCCTG
TCCCACGTGTGAACAATTTTAATTTGATTTAA
Protein sequenceShow/hide protein sequence
MSADNSPQTTVQTRWIPIPEDCWKLNCDASWSEEYQRGGFGWILRDWQGTPLMAGLRCFSLSWKVSWLETQAIIEGLRDIHQTTTTWLRVESDCLQVVRLLNGEDHEETE
LLFLIKDAQHLLSLRRIESISHIPRAYNQMAHVLAHKACEENDSKIWVNSFPEWLLSANEADIGCVHHNCGGPVPRVNNFNLI