; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011568 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011568
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr1:27864151..27864825
RNA-Seq ExpressionLag0011568
SyntenyLag0011568
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.4e-4164.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]5.3e-4164.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKLFGF+DG+  C P+T PS+T               + V  Q NPLYE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.4e-4164.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.4e-4164.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]1.4e-4164.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X26.7e-4264.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X36.7e-4264.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X16.7e-4264.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

A0A5D3CLI6 T4.56.7e-4264.1Show/hide
Query:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS
        +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKDQALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS S
Subjt:  SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSS

Query:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        R+N+VNLKSDLQ+I KK  ESID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Subjt:  RTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

A0A6J1DYF1 uncharacterized protein LOC1110257093.3e-4164.33Show/hide
Query:  SILKAHKLFGFIDGSTNCPPK-TVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSS
        +ILKAHKL+GFIDGST  P K  V SS +LSS S          P+   +NP +   +AKD ALMTL+NATLSP+ LAY+VGC SS+Q W+ L K+YSSS
Subjt:  SILKAHKLFGFIDGSTNCPPK-TVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSS

Query:  SRTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL
        SRTN+VNLKS+LQSI+KK GESID  ++RIKELKDKLANVSV+VD ED+LIY LNGL
Subjt:  SRTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGAC
TGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGC
CGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCA
GATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGA
GGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGAC
TGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGC
CGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCA
GATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGA
GGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA
Protein sequenceShow/hide protein sequence
MSILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKS
DLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGLLLPCAK