CuGenDBv2

Gene ID	Lag0011602
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr1:28802941..28806555
RNA-Seq Expression	Lag0011602
Synteny	Lag0011602
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]

7.4e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCE+FKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMTT  K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]

7.4e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCE+FKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMTT  K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]

7.4e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCE+FKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMTT  K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]

7.4e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCE+FKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMTT  K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

XP_031742360.1 uncharacterized protein LOC116404324 [Cucumis sativus]

7.4e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCE+FKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMTT  K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0A1 Ribonuclease H

6.1e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCEQFKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMT   K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

A0A5A7T1X2 Ribonuclease H

7.9e-24

80.28

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCEQFKINHRNSTPYRPKMNGAVEA NKNIK+ +EKMT   K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

A0A5A7T7R4 Ribonuclease H

6.1e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCEQFKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMT   K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

A0A5A7VLW3 RNA-directed DNA polymerase

4.7e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCEQFKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMT   K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

A0A5D3DW43 RNA-directed DNA polymerase

4.7e-24

81.69

Show/hide

Query:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK
        + E IC YGLPE IITDNAKNLNNK+M ELCEQFKINHRNSTPYRPKMNGAVEA NKNIK+ IEKMT   K
Subjt:  QNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIK

SwissProt top hits

e value

%identity

Alignment

P03365 Gag-Pro-Pol polyprotein

3.0e-04

32.91

Show/hide

Query:  HYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIKIGMKYCHLHYMGIA
        + G+P++I TDNA    ++ + E   ++KI+H    PY P+    VE T++NIK  + K+    K G  Y   H +  A
Subjt:  HYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIKIGMKYCHLHYMGIA

P11283 Gag-Pro-Pol polyprotein

5.2e-04

32.91

Show/hide

Query:  HYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIKIGMKYCHLHYMGIA
        + G P++I TDNA    ++ + E   ++KI+H    PY P+    VE T++NIK  + K+    K G  Y   H +  A
Subjt:  HYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIKIGMKYCHLHYMGIA

Q09575 Uncharacterized protein K02A2.6

8.0e-05

35.59

Show/hide

Query:  YGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKM
        +G PE II+DN   L + + +++C+   I H+ S  Y P+ NGA E     +K+ I K+
Subjt:  YGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKM

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCACAAAACGAGTGGATCTGTCATTATGGTCTCCCAGAAAGGATCATTACAGACAATGCAAAGAATCTTAACAACAAGATTATGAGTGAGCTTTGTGAGCAGTTCAA
GATAAATCATCGAAATTCAACTCCATATCGTCCAAAAATGAATGGTGCAGTTGAGGCAACCAACAAGAATATTAAAAAAAGCATTGAGAAAATGACCACACATATAAAGA
TTGGCATGAAATATTGCCATTTGCATTACATGGGTATCGCACGTCAATTCGTACCTCAACTGGGGCAACGCCATTTTCTTTGGTTTATGGTCCAATATATTTCGAACCCA
GCCCTAGAGTTGAGGTCGAAGTCTCCTCAAATTCTGGTTAAATTGAACTCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGCCGTGAGATACTCCCAGCAACTTC
GTCCGGCCAGCCAACCTCCCGCAGCTCCGACGCCGGCGACAGCGTGGGTGTGTTCGAATTAGCAATTTTTTCGACGACAGTAACGTTAGGCGCGACCAGCAGCTTTTCAA
GGGCGTTTTCAGCATTTTTCCGAAGTGTAGTCCAGTGGCAAGCGTTCTCTTCGTATCTAGCGATTTGGGCGTTGAATCTCCGAGTTTCAGCATCTTTGAGTGGGTTCGTC
TTTGGCATCCAAGGAGTTAAGCGTCATTTTGGAGTAGAATCGAGGCCCGAACAACAAGCTAAATTCTCTCTTTGGTTGATTAAGGGCCTTGGAGCTAGGAGGTTCTTCAG
TTTTATCTCGCAACTCTTCATCTATGACGGTGTTGAGCCCATGTTCAGGCACGTTTTCGTGCACCAGTCGTTCCATCAAGTTTTCGATGTTGAGCTCATATTCAGGCACA
TTTTCGTGCACCAGTCGCTCCATCGAGTATTCAATGTTGAGATTCTGCTCAGGCATGTTTTCATGCACCAGATTGTTCCATCGTATTTTCATGATTCAGGGGTGTTGTGT
TGGGATAAGTGTAGTTCTGCTAGAGGTTGCCAGCTAGTCTCTAGTATACTTGCCTTACCCGACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSQNEWICHYGLPERIITDNAKNLNNKIMSELCEQFKINHRNSTPYRPKMNGAVEATNKNIKKSIEKMTTHIKIGMKYCHLHYMGIARQFVPQLGQRHFLWFMVQYISNP
ALELRSKSPQILVKLNSVLELRSKPVSISREILPATSSGQPTSRSSDAGDSVGVFELAIFSTTVTLGATSSFSRAFSAFFRSVVQWQAFSSYLAIWALNLRVSASLSGFV
FGIQGVKRHFGVESRPEQQAKFSLWLIKGLGARRFFSFISQLFIYDGVEPMFRHVFVHQSFHQVFDVELIFRHIFVHQSLHRVFNVEILLRHVFMHQIVPSYFHDSGVLC
WDKCSSARGCQLVSSILALPD

Lag0011602 (gene) of Sponge gourd (AG-4) v1 genome