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Lag0011604 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011604
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:28821709..28829734
RNA-Seq ExpressionLag0011604
SyntenyLag0011604
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.4e-0868.09Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        MRD PLICTGESG   DSI L F GQDR+GSWE + TRWN L P  R
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.0e-0666.67Show/hide
Query:  DFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        D PLI T ESG  ADS+ L FWGQDRV SWE + TRWNSL P  R
Subjt:  DFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-0968.09Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        +RD PL CTGESG   DSI L FWGQDRVGSWE + TRWNS  P  R
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-0429.49Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRVSRGPSGPTGSSIRALSKIK--------------ITLLLFFCELTREKGSFYP
        +RD PLICTGESG  ADSI L FWGQDRVG W+         FP +    G    T ++ R + +++               +L+    ++ R    F+ 
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRVSRGPSGPTGSSIRALSKIK--------------ITLLLFFCELTREKGSFYP

Query:  EFFKAPAAAASLAQ----SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPA
          ++    A  LAQ    S    P+  + S +R +         P  +L P   PA
Subjt:  EFFKAPAAAASLAQ----SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPA

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein6.9e-0968.09Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        MRD PLICTGESG   DSI L F GQDR+GSWE + TRWN L P  R
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

A0A5A7U202 Reverse transcriptase8.8e-0429.89Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRV---------SRGPSGPTGSSIRALSKIKITLLLFFCELT-------REKGSF
        +RD PLICTGESG  ADSI L FWGQDRVG W+         FP + +         +R P      S+     I +     F  +        R   S 
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRV---------SRGPSGPTGSSIRALSKIKITLLLFFCELT-------REKGSF

Query:  YPEFFKAPAAAASLAQ-SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPAMGFSSSRHLSERRRRSASR
         P   +A A   + A  + P  P  H    +R +R    H   P      S+  +    +   LS R R S  R
Subjt:  YPEFFKAPAAAASLAQ-SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPAMGFSSSRHLSERRRRSASR

A0A5A7U2P4 Integrase catalytic domain-containing protein5.0e-0766.67Show/hide
Query:  DFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        D PLI T ESG  ADS+ L FWGQDRV SWE + TRWNSL P  R
Subjt:  DFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

A0A5D3C3J6 Gag/pol protein1.8e-0968.09Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR
        +RD PL CTGESG   DSI L FWGQDRVGSWE + TRWNS  P  R
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIR

A0A5D3CBX3 Reverse transcriptase1.8e-0429.49Show/hide
Query:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRVSRGPSGPTGSSIRALSKIK--------------ITLLLFFCELTREKGSFYP
        +RD PLICTGESG  ADSI L FWGQDRVG W+         FP +    G    T ++ R + +++               +L+    ++ R    F+ 
Subjt:  MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRVSRGPSGPTGSSIRALSKIK--------------ITLLLFFCELTREKGSFYP

Query:  EFFKAPAAAASLAQ----SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPA
          ++    A  LAQ    S    P+  + S +R +         P  +L P   PA
Subjt:  EFFKAPAAAASLAQ----SSPNSPSCHQGSVSRFSRCEARHAAPPFANLSPSLPPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTTTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACTATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAATGTAGTCTTAC
AAGATGGAATTCACTCTTTCCCGATATTAGGGTAAGTAGAGGTCCATCAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGTAAGATCAAGATCACTTTGTTGCTGTTTT
TCTGCGAACTTACGAGGGAAAAAGGCAGTTTTTATCCAGAATTCTTCAAGGCTCCAGCCGCCGCCGCCTCCCTTGCTCAGTCGTCGCCTAACTCTCCCAGTTGCCACCAG
GGTTCAGTGTCGCGTTTCAGTCGTTGTGAAGCTCGTCACGCCGCCCCTCCCTTCGCGAATCTCTCTCCCTCTCTGCCGCCGGCCATGGGGTTCTCGTCGTCCCGCCACCT
GTCTGAGCGCCGCCGCCGCTCAGCCTCTCGCATGAGGTTATTCCTCCCTCTCTGTGGTTCGGCCAAGCCCCGTTTCTTGTGGGTTTTTCGCTGTGAAGTTAAAGAAACTC
GTGGATCTTGTGCGGACAGCAGCTCGAAATCTCGTTTCGTCCGCGTTTCAGCTTTAGAAATAGTGGATCTCGTGTGTCTAGCGATTTGGAGTCCCATCGACCTCATTTCA
GTCAATTCCGCCTCTGTCCAGCAGCGTTTTGGGGTGTTTTTGGCACCGCTTGACTATCCCGATAAGTTTAAACGCTTACCCATGTTCAGTTGCGTCGTGTTTGCTCAGTT
CGTGACTGTTTCGGCGTCAATTATCGTTCCCGATAAGTTTAGCCCTTACCCACTCATGTTTAGAGATTTAAGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCT
TGGAAGCGCTATATTACCACGGTTGTACTGATACCCCCTTCCCCACCTTTCCTCCCAACATTTTAGATGTTGCAGGTATCGAGGATGATCCGGACCTTGGTGGCGATGAG
GAGAACTACGAAGAAAGTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTTTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACTATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAATGTAGTCTTAC
AAGATGGAATTCACTCTTTCCCGATATTAGGGTAAGTAGAGGTCCATCAGGTCCCACCGGTAGCTCTATAAGGGCGTTGAGTAAGATCAAGATCACTTTGTTGCTGTTTT
TCTGCGAACTTACGAGGGAAAAAGGCAGTTTTTATCCAGAATTCTTCAAGGCTCCAGCCGCCGCCGCCTCCCTTGCTCAGTCGTCGCCTAACTCTCCCAGTTGCCACCAG
GGTTCAGTGTCGCGTTTCAGTCGTTGTGAAGCTCGTCACGCCGCCCCTCCCTTCGCGAATCTCTCTCCCTCTCTGCCGCCGGCCATGGGGTTCTCGTCGTCCCGCCACCT
GTCTGAGCGCCGCCGCCGCTCAGCCTCTCGCATGAGGTTATTCCTCCCTCTCTGTGGTTCGGCCAAGCCCCGTTTCTTGTGGGTTTTTCGCTGTGAAGTTAAAGAAACTC
GTGGATCTTGTGCGGACAGCAGCTCGAAATCTCGTTTCGTCCGCGTTTCAGCTTTAGAAATAGTGGATCTCGTGTGTCTAGCGATTTGGAGTCCCATCGACCTCATTTCA
GTCAATTCCGCCTCTGTCCAGCAGCGTTTTGGGGTGTTTTTGGCACCGCTTGACTATCCCGATAAGTTTAAACGCTTACCCATGTTCAGTTGCGTCGTGTTTGCTCAGTT
CGTGACTGTTTCGGCGTCAATTATCGTTCCCGATAAGTTTAGCCCTTACCCACTCATGTTTAGAGATTTAAGAGCTCATCTTGGCTGCTTTAGGCTTGTTGAGGTTGCCT
TGGAAGCGCTATATTACCACGGTTGTACTGATACCCCCTTCCCCACCTTTCCTCCCAACATTTTAGATGTTGCAGGTATCGAGGATGATCCGGACCTTGGTGGCGATGAG
GAGAACTACGAAGAAAGTTCTTAG
Protein sequenceShow/hide protein sequence
MRDFPLICTGESGLFADSISLLFWGQDRVGSWECSLTRWNSLFPDIRVSRGPSGPTGSSIRALSKIKITLLLFFCELTREKGSFYPEFFKAPAAAASLAQSSPNSPSCHQ
GSVSRFSRCEARHAAPPFANLSPSLPPAMGFSSSRHLSERRRRSASRMRLFLPLCGSAKPRFLWVFRCEVKETRGSCADSSSKSRFVRVSALEIVDLVCLAIWSPIDLIS
VNSASVQQRFGVFLAPLDYPDKFKRLPMFSCVVFAQFVTVSASIIVPDKFSPYPLMFRDLRAHLGCFRLVEVALEALYYHGCTDTPFPTFPPNILDVAGIEDDPDLGGDE
ENYEESS