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Lag0011634 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011634
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:29554683..29555919
RNA-Seq ExpressionLag0011634
SyntenyLag0011634
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39086.1 ribosomal protein S12 [Striga asiatica]6.8e-1292.31Show/hide
Query:  GQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        G  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  GQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

KAF7129436.1 hypothetical protein RHSIM_Rhsim10G0123300 [Rhododendron simsii]6.8e-1242.28Show/hide
Query:  DLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQ----------------------------ECAFIDV-VDWRQPY
        +LK  T   G L Y+ S G+LARC+G EEA  +++EVH++ CG T  V+LYRRLQ Q                            EC FI V  DWR+PY
Subjt:  DLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQ----------------------------ECAFIDV-VDWRQPY

Query:  IEYLTKGTLPDDRYEANKLKKIA
        I++LT GTLP DR +   +KK A
Subjt:  IEYLTKGTLPDDRYEANKLKKIA

KJB09732.1 hypothetical protein B456_001G160800 [Gossypium raimondii]1.2e-1366.2Show/hide
Query:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYE
        MSDGVLARCLGVEEAAKRLEEVHDKVCGTT PVNLYRRLQ Q   + D+    +   E   K T   DR E
Subjt:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYE

XP_023919952.1 uncharacterized protein LOC112031487 [Quercus suber]2.0e-1136.84Show/hide
Query:  GNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQ-----------------------------GQECAFIDVVDWRQPYIEYLTKGTL
        G L  +M  G+L+RC+G EEA ++L+EVHD+ CG+   ++LYRRLQ                             G+  A +   DWR P+  YLTKG L
Subjt:  GNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQ-----------------------------GQECAFIDVVDWRQPYIEYLTKGTL

Query:  PDDRYEANKLKKIA
        P    E+ KLK++A
Subjt:  PDDRYEANKLKKIA

XP_030930582.1 uncharacterized protein LOC115956301 [Quercus lobata]2.0e-1139.45Show/hide
Query:  KMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQG-----------------------------QECAFIDVVDWRQPYIEYLTKGTLPDDRY
        K+  GVLARCL   E+ +RL+EVH+K CG +  V+LYRRLQ                              + CA     DWR P++EYL +G LPD+  
Subjt:  KMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQG-----------------------------QECAFIDVVDWRQPYIEYLTKGTLPDDRY

Query:  EANKLKKIA
        EA +LKK+A
Subjt:  EANKLKKIA

TrEMBL top hitse value%identityAlignment
A0A0D2LZA6 Uncharacterized protein6.0e-1466.2Show/hide
Query:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYE
        MSDGVLARCLGVEEAAKRLEEVHDKVCGTT PVNLYRRLQ Q   + D+    +   E   K T   DR E
Subjt:  MSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYE

A0A2N9GY06 Ribonuclease H5.6e-1233.87Show/hide
Query:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQ-----------------------------GQECAFIDVVDWRQP
        + +K  T  CG+L  ++ +GVLARC+ +EEA +RL EVH+K CG    ++LYR+LQ                              + CA     DWR P
Subjt:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQ-----------------------------GQECAFIDVVDWRQP

Query:  YIEYLTKGTLPDDRYEANKLKKIA
        ++EYL +G LP +  +  +LK++A
Subjt:  YIEYLTKGTLPDDRYEANKLKKIA

A0A2N9HYA7 Integrase catalytic domain-containing protein3.3e-1241.67Show/hide
Query:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQE-CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        +++K  T    +L  ++S GVLARC+ +E+A ++L EVH+K C     V+LYRRL  +E C      DWR P++EYL KG LP +  +  +LK +A
Subjt:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQE-CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A2N9J8U0 Ribonuclease H3.3e-1245.26Show/hide
Query:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        K LK      G+L  ++  GVLARC+ ++EAAK+L EVH+K C     V+ YRRLQ    A     DWR P++EYL +  LP  R  A +LKK+A
Subjt:  KDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

A0A5A7Q2J0 Ribosomal protein S123.3e-1292.31Show/hide
Query:  GQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA
        G  CAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKK+A
Subjt:  GQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGGAAAGACTTGAAATGCGGAACAAAATGTTGTGGCAATTTGGACTACAAGATGTCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAG
ACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGTAAACCTCTACAGAAGATTGCAAGGACAAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGC
CATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAGCGATGGAGATCATGCACC
AATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGACGAAAGCTGTTTCAGTATTTGCTGCAATCATCAAAAAAAGGGAAATCCCGGCGGGACCCTTGTTCGTCGTTAC
TGGAAGCGTTGGGATACCTCACCTCCTGGGTCGACATGTGGAGTTTGCTGGGCAGTTAAAACCCCCTGCTCTGGTAGCTCCTCGGAACCCAAACCCTTCTTCAACTTGCC
CCTATCTAGTAAGTACGTGTGACCTGCCTGCTAGGGAAACTGTTACTGGATTCGTGCCCAGCGCACCTTACCGTAAGTGGTCTTGGGAAGCTTCAGTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGGAAAGACTTGAAATGCGGAACAAAATGTTGTGGCAATTTGGACTACAAGATGTCCGATGGGGTCTTAGCTCGGTGCCTTGGCGTTGAAGAAGCAGCAAAGAG
ACTTGAAGAAGTTCATGATAAGGTCTGTGGGACAACAACACCGGTAAACCTCTACAGAAGATTGCAAGGACAAGAATGTGCATTTATCGATGTAGTGGATTGGAGACAGC
CATATATCGAGTATCTGACAAAAGGAACCTTACCGGATGATAGATACGAAGCGAATAAGCTAAAGAAGATAGCCAACCTAAAGGTGATGAAGCGATGGAGATCATGCACC
AATCACATGCTGGCATCTTGGCGAGCACCAAGGAGGACGAAAGCTGTTTCAGTATTTGCTGCAATCATCAAAAAAAGGGAAATCCCGGCGGGACCCTTGTTCGTCGTTAC
TGGAAGCGTTGGGATACCTCACCTCCTGGGTCGACATGTGGAGTTTGCTGGGCAGTTAAAACCCCCTGCTCTGGTAGCTCCTCGGAACCCAAACCCTTCTTCAACTTGCC
CCTATCTAGTAAGTACGTGTGACCTGCCTGCTAGGGAAACTGTTACTGGATTCGTGCCCAGCGCACCTTACCGTAAGTGGTCTTGGGAAGCTTCAGTTCTCTAG
Protein sequenceShow/hide protein sequence
MARKDLKCGTKCCGNLDYKMSDGVLARCLGVEEAAKRLEEVHDKVCGTTTPVNLYRRLQGQECAFIDVVDWRQPYIEYLTKGTLPDDRYEANKLKKIANLKVMKRWRSCT
NHMLASWRAPRRTKAVSVFAAIIKKREIPAGPLFVVTGSVGIPHLLGRHVEFAGQLKPPALVAPRNPNPSSTCPYLVSTCDLPARETVTGFVPSAPYRKWSWEASVL