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Lag0011637 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011637
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr1:29713221..29713588
RNA-Seq ExpressionLag0011637
SyntenyLag0011637
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8047165.1 hypothetical protein N665_3173s0007 [Sinapis alba]2.8e-0551.79Show/hide
Query:  MDMFDGSSEFVRVDNSETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGC
        M++  GSS   R  NS  K   +C CGL A +  +WT  NPGRRFYGCP YK+ GC
Subjt:  MDMFDGSSEFVRVDNSETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGC

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]9.6e-0654.35Show/hide
Query:  RVDNSETKNPS-YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGC
        R+++ +   P   CHCGLRA L TSWT+ NPGRRF+ CP Y+  GC
Subjt:  RVDNSETKNPS-YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGC

KAG8366582.1 hypothetical protein BUALT_Bualt17G0094900 [Buddleja alternifolia]3.6e-0567.65Show/hide
Query:  CHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS
        CHCGLR  L TSWT  NPGRRFY CP Y+  GC+
Subjt:  CHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS

PIN21218.1 DNA topoisomerase [Handroanthus impetiginosus]4.3e-0659.52Show/hide
Query:  SETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS
        S  +  +YCHCG RA L TSWTK NPGRRF+ C  YK  GC+
Subjt:  SETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS

PWA46535.1 zinc finger, GRF-type [Artemisia annua]2.8e-0552.27Show/hide
Query:  YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCSSSLLCQGMV
        YC+CG R  +ITSWT  NPGRRFYGCP + I+      +C+  V
Subjt:  YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCSSSLLCQGMV

TrEMBL top hitse value%identityAlignment
A0A2G9HUL6 DNA topoisomerase2.1e-0659.52Show/hide
Query:  SETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS
        S  +  +YCHCG RA L TSWTK NPGRRF+ C  YK  GC+
Subjt:  SETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCS

A0A2U1LC06 Zinc finger, GRF-type1.4e-0552.27Show/hide
Query:  YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCSSSLLCQGMV
        YC+CG R  +ITSWT  NPGRRFYGCP + I+      +C+  V
Subjt:  YCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCSSSLLCQGMV

A0A2U1MNB0 Zinc finger, GRF-type3.9e-0577.78Show/hide
Query:  YCHCGLRARLITSWTKWNPGRRFYGCP
        YCHCGLRA++ TSWT  NPGRRFY CP
Subjt:  YCHCGLRARLITSWTKWNPGRRFYGCP

A0A2U1PRH3 Zinc finger, GRF-type3.9e-0577.78Show/hide
Query:  YCHCGLRARLITSWTKWNPGRRFYGCP
        YCHCGLRA++ TSWT  NPGRRFY CP
Subjt:  YCHCGLRARLITSWTKWNPGRRFYGCP

A0A6P5ETD2 uncharacterized protein LOC1097090713.9e-0547.83Show/hide
Query:  SEFVRVDNSETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKI
        S F    +   ++   CHCGL   + TSWT+ NPGRRFYGCP Y++
Subjt:  SEFVRVDNSETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGACATGTTTGATGGAAGTTCAGAGTTCGTAAGAGTCGATAATAGTGAAACTAAGAACCCTAGCTACTG
TCACTGTGGGTTACGAGCTCGATTAATCACTTCATGGACAAAGTGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGATACTCGGCTGCTCGTCTTCTCTGT
TGTGTCAGGGAATGGTTCGGGATGTGGATTTTTTTATTGGTGTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAAGAAATGCCACAGAAACTTTCGAAAATTGCAATGGACATGTTTGATGGAAGTTCAGAGTTCGTAAGAGTCGATAATAGTGAAACTAAGAACCCTAGCTACTG
TCACTGTGGGTTACGAGCTCGATTAATCACTTCATGGACAAAGTGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGATACTCGGCTGCTCGTCTTCTCTGT
TGTGTCAGGGAATGGTTCGGGATGTGGATTTTTTTATTGGTGTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGA
Protein sequenceShow/hide protein sequence
MSQEMPQKLSKIAMDMFDGSSEFVRVDNSETKNPSYCHCGLRARLITSWTKWNPGRRFYGCPGYKILGCSSSLLCQGMVRDVDFFIGVIQKYQNTAKK