CuGenDBv2

Gene ID	Lag0011651
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RAB GTPase homolog A4D
Genome location	chr1:29981440..29984171
RNA-Seq Expression	Lag0011651
Synteny	Lag0011651
Gene Ontology terms	GO:0080092 - regulation of pollen tube growth (biological process) GO:0045177 - apical part of cell (cellular component) GO:0070382 - exocytic vesicle (cellular component) GO:0090404 - pollen tube tip (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function) GO:0019900 - kinase binding (molecular function)
InterPro domains	IPR001806 - Small GTPase IPR005225 - Small GTP-binding protein domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595661.1 Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]

7.7e-34

95.06

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

XP_004150166.1 ras-related protein RABA4d [Cucumis sativus]

3.4e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

XP_008460801.1 PREDICTED: ras-related protein RABA4d [Cucumis melo]

3.4e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

XP_022925137.1 ras-related protein RABA4d [Cucurbita moschata]

7.7e-34

95.06

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

XP_038881448.1 ras-related protein RABA4d [Benincasa hispida]

3.4e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KW90 Uncharacterized protein

1.7e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

A0A1S3CDP9 ras-related protein RABA4d

1.7e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

A0A5A7UD85 Ras-related protein RABA4d

1.7e-34

96.3

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

A0A6J1DE05 ras-related protein RABA4d-like

3.7e-34

95.06

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

A0A6J1HTU8 ras-related protein RABA4d

3.7e-34

95.06

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

SwissProt top hits

e value

%identity

Alignment

Q40191 Ras-related protein Rab11A

1.8e-30

84.42

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSK+TIGVEFQT+TLVID KTVKAQIWDTAGQERY  +T
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Q40520 Ras-related protein Rab11C

1.4e-30

81.48

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFS+DSKATIGVEFQT+TLVI  K+VKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Q40522 Ras-related protein Rab11D

1.2e-29

79.01

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSKATIGVEFQT+TL I  K+VKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Q9FE79 Ras-related protein RABA4c

1.4e-30

80.25

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Q9LH50 Ras-related protein RABA4d

3.8e-36

93.83

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID KTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Arabidopsis top hits

e value

%identity

Alignment

AT1G01200.1 RAB GTPase homolog A3

4.1e-25

Show/hide

Query:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIWDTAGQERY  +T
Subjt:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

AT3G12160.1 RAB GTPase homolog A4D

2.7e-37

93.83

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID KTVKAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

AT4G39990.1 RAB GTPase homolog A4B

7.9e-29

77.92

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++KAQIWDTAGQERY  +T
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

AT5G47960.1 RAB GTPase homolog A4C

1.0e-31

80.25

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQERY  +T
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

AT5G65270.1 RAB GTPase homolog A4A

1.4e-30

81.82

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT
        YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFS+DSKATIGVEFQT+TLVID K+VKAQIWDTAGQERY  +T
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPIT

Sequences

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CDS sequence

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ATGTCGAATCTATATGGGGATTACAATCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTAGGCAAAACCCAACTCCTTGCACGATTTTCACG
GAATGAATTTAGCGTTGATTCAAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTTGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGAC
AAGAGAGGTATGTACCCATTACCCTTTTTATCCCCTTATCTTTTGTGGGGTTGATTGTTTTTGTTTGTTTGCGGTGGACTACTTCATTGTTCATGGTTAAAGAGACTCTT
GCTTGGAATCGGTTGATGGAAGAGTCATCAACCACTCTGGCACTCGCTGAAGTTCAAGGTGGCAATGACAGCTTCATTTCTGATGTCTCGAAGAAAACACACTACGAGCA
TTTTATAGTTCTGCTACAGAAGGGCAGCTTGCAAGAGCATAGGAAGATGTTCAGAAAGATATTTGAAATCTCAGCAGCTCCCCTGCTGAACATACCTGATACCCAGTCAA
CTCTATCAGCAGTAACAGCTAGGCAAACCCTGTATGTTCCTATAAGATCGACTACTTCCCCTACTGAGAAGAGTTTTGTGACTGGGTACAACGAGGGAACAATGCAAAGG
ACACCCCATACAAATGTCTCACTGATGCTGAGTTGTAGTGGCGCAGGCCTATGTTTCCAGTGTGAAGGAAAGTATATGTTCGGTCACCACTGGCCATTTCAAGTGGATTG
CATTGGCAAGGTTGCTTATCAGCTGAAGTTGCCACCTTTCATAGGAATACAGTTTGGCTTGAAACAGAAACGGAAAATTAGCTCCTCTGTATTCCATGTCTCCCAGTTCA
AATGGGCCAAAAGAACGGATTTAAGCACAGCTCCAATACCACCACAGTTCAGTTCAACCACAGAATCCAATTTATCTCTCGCTCTTGTGCTTGGTTTGTGGCCTCCTGAT
TCTTCTCTAGGGGAACTTAGTACCAATTCAGTGGTTCAGTAG

mRNA sequence

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Protein sequence

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MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYVPITLFIPLSFVGLIVFVCLRWTTSLFMVKETL
AWNRLMEESSTTLALAEVQGGNDSFISDVSKKTHYEHFIVLLQKGSLQEHRKMFRKIFEISAAPLLNIPDTQSTLSAVTARQTLYVPIRSTTSPTEKSFVTGYNEGTMQR
TPHTNVSLMLSCSGAGLCFQCEGKYMFGHHWPFQVDCIGKVAYQLKLPPFIGIQFGLKQKRKISSSVFHVSQFKWAKRTDLSTAPIPPQFSSTTESNLSLALVLGLWPPD
SSLGELSTNSVVQ

Lag0011651 (gene) of Sponge gourd (AG-4) v1 genome