; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011657 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011657
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationchr1:30094201..30096621
RNA-Seq ExpressionLag0011657
SyntenyLag0011657
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578890.1 Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.0e-10757.84Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                                                     +YLHNDEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEET+KDMQEP FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGYNGS                    EGLHEYN+R+HLMNLEKKR KGMLLGR+EKNKRKD EPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
        SLFD+G+A
Subjt:  SLFDNGAA

XP_022939501.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]1.0e-10757.84Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                                                     +YLHNDEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEET+KDMQEP FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGYNGS                    EGLHEYN+R+HLMNLEKKR KGMLLGR+EKNKRKD EPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
        SLFD+G+A
Subjt:  SLFDNGAA

XP_022993888.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima]2.0e-10858.09Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                                                     +YLH+DEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEETVKDMQEP FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGYNGS                    EGLHEYN+R+HLMNLEKKR KGMLLGR++KNKRKDFEPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
         LFD+G+A
Subjt:  SLFDNGAA

XP_023551426.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]1.0e-10758.09Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY  K F RNFSLWSMKKDPDLESALS                                                     +YLHNDEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEETVKDMQEP FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGY+GS                    EGLHEYN+R+HLMNLEKKR KGMLLGR+EKNKRKD EPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
        SLFD+G+A
Subjt:  SLFDNGAA

XP_038886354.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida]1.5e-10657.35Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W    SSPY  KYFLRNFSLWSMKKDPDLESALS                                                     +YLHNDE YFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEE VKDMQEP+ V++LAKLLMMASN RLNVVKLGEL++NFGL DDYLIRIVPKYSDMFRIVNY+GK+NSMEIEL+SWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVE-------------------QF----------SPAHCQQ--------------------------------LGKEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                   +F          +PA   Q                                  +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVE-------------------QF----------SPAHCQQ--------------------------------LGKEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTV+LREGYNGS                    EGLHEYNKR+HLMNLEKKR KGMLLGR+EKNKRKDFEPDDPD QGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
        SLFD+G A
Subjt:  SLFDNGAA

TrEMBL top hitse value%identityAlignment
A0A0A0KEF0 PORR domain-containing protein1.3e-10054.09Show/hide
Query:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY
        +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS                                                     +Y
Subjt:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY

Query:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE
        L NDE+YFRLTKRMMALVEEEE VKDMQEP  V++L KLLMMASN RLNVVKL ELRRNFGLPDD+LIRI+PK+SD+FRIVNY+GK+NSMEIEL+SWKPE
Subjt:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE

Query:  LAISIIESSACKHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNT
        LAIS IESSACKHGVE                                                           +  A   +LG   KEFG LP KLN 
Subjt:  LAISIIESSACKHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNT

Query:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL
        LLLKHPGIF VSNKYQIYTV+LREGYNGS                    EGLHEYNKR+HLMNLEKKR KGMLLGR+EKNKRKDFE DD + QGNNLGGL
Subjt:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL

Query:  LEPEERKRFYQSLFDN
        LEPEERKRFYQSLFD+
Subjt:  LEPEERKRFYQSLFDN

A0A1S4DTX7 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 11.6e-9852.74Show/hide
Query:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY
        +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS                                                     +Y
Subjt:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY

Query:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE
        L+NDE+YFRLTKRMMALVEEEE VKDMQEP  V++L KLLMMASN RLNV+KL ELRRNFGLPDD+LIRI+PK+SD+FRIVNY+GK+NSMEIEL+SWKPE
Subjt:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE

Query:  LAISIIESSACKHGVE-----------------------------QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT
        LAIS IESSACKHGVE                               +PA   Q                                  KEFG LP KLN 
Subjt:  LAISIIESSACKHGVE-----------------------------QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT

Query:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL
        LLLKHPGIF VSNKYQIYTV+LREGYNGS                    EGLHEYNKR+HLMNLEKKR KG   G+  KNKRKDFE DD + QGNNLGGL
Subjt:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL

Query:  LEPEERKRFYQSLFDNGAA
        LEPEERKRFYQSLFD+G A
Subjt:  LEPEERKRFYQSLFDNGAA

A0A5D3DGZ3 Protein ROOT PRIMORDIUM DEFECTIVE 11.5e-10153.94Show/hide
Query:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY
        +L  +   +  W   LSSP   KY LRNFSLWSMKKDPDLESALS                                                     +Y
Subjt:  LLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LY

Query:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE
        L+NDE+YFRLTKRMMALVEEEE VKDMQEP  V++L KLLMMASN RLNV+KL ELRRNFGLPDD+LIRI+PK+SD+FRIVNY+GK+NSMEIEL+SWKPE
Subjt:  LHNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPE

Query:  LAISIIESSACKHGVE-----------------------------QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT
        LAIS IESSACKHGVE                               +PA   Q                                  KEFG LP KLN 
Subjt:  LAISIIESSACKHGVE-----------------------------QFSPAHCQQ--------------------------------LGKEFGQLPTKLNT

Query:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL
        LLLKHPGIF VSNKYQIYTV+LREGYNGS                    EGLHEYNKR+HLMNLEKKR KGMLLGR+EKNKRKDFE DD + QGNNLGGL
Subjt:  LLLKHPGIFSVSNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGL

Query:  LEPEERKRFYQSLFDNGAA
        LEPEERKRFYQSLFD+G A
Subjt:  LEPEERKRFYQSLFDNGAA

A0A6J1FG34 protein WHAT'S THIS FACTOR 1 homolog4.9e-10857.84Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                                                     +YLHNDEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEET+KDMQEP FVE+LAKLLMMASN RLNV+KLGEL+R FGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGYNGS                    EGLHEYN+R+HLMNLEKKR KGMLLGR+EKNKRKD EPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
        SLFD+G+A
Subjt:  SLFDNGAA

A0A6J1K3L2 protein ROOT PRIMORDIUM DEFECTIVE 19.8e-10958.09Show/hide
Query:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT
        W   LSSPY+ K FLRNFSLWSMKKDPDLESALS                                                     +YLH+DEYYFRLT
Subjt:  WGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLT

Query:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC
        KRMMALVEEEETVKDMQEP FVE+LAKLLMMASN RLNV+KLGELRRNFGLPDDYLIRIVPK+SDMFRIVNY+GKRNSMEIELVSWKPELAIS IESSAC
Subjt:  KRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSAC

Query:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV
        KHGVE                                                           +  A   +LG   +EFG LP KLN LLLKHPGIF V
Subjt:  KHGVEQ----------------------------------------------------------FSPAHCQQLG---KEFGQLPTKLNTLLLKHPGIFSV

Query:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ
        SNKYQIYTVLLREGYNGS                    EGLHEYN+R+HLMNLEKKR KGMLLGR++KNKRKDFEPDD DDQGNNLGGLLEPEERKRFYQ
Subjt:  SNKYQIYTVLLREGYNGS--------------------EGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQ

Query:  SLFDNGAA
         LFD+G+A
Subjt:  SLFDNGAA

SwissProt top hitse value%identityAlignment
A0MFS5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic1.0e-0631.37Show/hide
Query:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE
        F++T     L  +E  +++  E + V +L KL+MM+ + R+ + K+  L+ + GLP ++   I  +Y   FR+V          +EL  W PELA+S  E
Subjt:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE

Query:  SS
         S
Subjt:  SS

B6TTV8 Protein WHAT'S THIS FACTOR 1, chloroplastic1.6e-0733Show/hide
Query:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE
        FRLT     L  +E  +++  E + V +L KLLMM+   R+ + K+  L+ + GLP ++   +  +Y   FR+V          +EL  W PELA+S  E
Subjt:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE

Q65XL5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic5.5e-0835Show/hide
Query:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE
        FRLT     L  +E  +K+  E + V +L KLLMM+ + R+ + K+  L+ + GLP ++   I  +Y   FR+V          +EL  W PELA+S  E
Subjt:  FRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIE

Q689D6 Protein ROOT PRIMORDIUM DEFECTIVE 13.0e-0631.68Show/hide
Query:  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISII
        Y RLT++ +  +  E      Q P  V +L KL+MM++  R+ +  +   R  FGLP+D+   ++ K+   FR+++    R+   IE+V   P L+I  I
Subjt:  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISII

Query:  E
        E
Subjt:  E

Arabidopsis top hitse value%identityAlignment
AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein8.7e-0923.55Show/hide
Query:  EQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIES-------------------------
        ++L KLLM+   +++ +  L  L+ + GLP DY+  +VP++ D FR++    +  S E+ELV W  E A+S++E                          
Subjt:  EQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIES-------------------------

Query:  -----------------------------SACKHGVEQFSPAHCQQLGK----------------EFGQLPTKLNTLLLKHPGIFSVSNKYQIYTVLLRE
                                     SA     ++++ A   ++                  EF  L ++   +L  HPGIF +S+K + +TV+LR+
Subjt:  -----------------------------SACKHGVEQFSPAHCQQLGK----------------EFGQLPTKLNTLLLKHPGIFSVSNKYQIYTVLLRE

Query:  GY------NGSEGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRK-DFEPDDPDDQGNN
        GY        +E +   N+   LMN  KK  K +     +++K K + E  D D +  N
Subjt:  GY------NGSEGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRK-DFEPDDPDDQGNN

AT1G79120.1 Ubiquitin carboxyl-terminal hydrolase family protein2.1e-1030.17Show/hide
Query:  HNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPEL
        H +  +  LT++   +  EE    +  EPI V  L KLLMM+ + R+ + K+  ++   GLP D+   ++PKY++ F +   +GK N   + L +W   L
Subjt:  HNDEYYFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPEL

Query:  AISIIESSACKHGVEQ
        AI+  E    + G  +
Subjt:  AISIIESSACKHGVEQ

AT2G31290.1 Ubiquitin carboxyl-terminal hydrolase family protein8.9e-7041.13Show/hide
Query:  LSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLTKRMM
        L + YA    +R FSLWS KKDPDLESALS                                                     +YL NDEYY RLTK MM
Subjt:  LSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLTKRMM

Query:  ALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGV
         LVEEEE VKD QEP+  ++LAKLLM++ N RLNVVKL E +R+FG PDDY+IRIVPKYSD+FR+VNYSG+++SMEIEL+ WKPELA+S +E++A K G 
Subjt:  ALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGV

Query:  E-------------------------------------------------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY
        E                                                             + S        +EFG LP KLN +LLKHPGIF V NKY
Subjt:  E-------------------------------------------------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY

Query:  QIYTVLLREGYNGSE--------------------GLHEYNKRNHLMNLEKKRTKGM-----LLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFY
        Q++TV+LREGYNGSE                    GL+EYN R +L NLEKKR KG+     ++ + ++N  +D + D+ ++ G+  GGL +PEERKRFY
Subjt:  QIYTVLLREGYNGSE--------------------GLHEYNKRNHLMNLEKKRTKGM-----LLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFY

Query:  QSLFDN
        Q LF +
Subjt:  QSLFDN

AT2G31290.2 Ubiquitin carboxyl-terminal hydrolase family protein8.9e-7041.13Show/hide
Query:  LSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLTKRMM
        L + YA    +R FSLWS KKDPDLESALS                                                     +YL NDEYY RLTK MM
Subjt:  LSSPYAFKYFLRNFSLWSMKKDPDLESALS-----------------------------------------------------LYLHNDEYYFRLTKRMM

Query:  ALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGV
         LVEEEE VKD QEP+  ++LAKLLM++ N RLNVVKL E +R+FG PDDY+IRIVPKYSD+FR+VNYSG+++SMEIEL+ WKPELA+S +E++A K G 
Subjt:  ALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGV

Query:  E-------------------------------------------------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY
        E                                                             + S        +EFG LP KLN +LLKHPGIF V NKY
Subjt:  E-------------------------------------------------------------QFSPAHCQQLGKEFGQLPTKLNTLLLKHPGIFSVSNKY

Query:  QIYTVLLREGYNGSE--------------------GLHEYNKRNHLMNLEKKRTKGM-----LLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFY
        Q++TV+LREGYNGSE                    GL+EYN R +L NLEKKR KG+     ++ + ++N  +D + D+ ++ G+  GGL +PEERKRFY
Subjt:  QIYTVLLREGYNGSE--------------------GLHEYNKRNHLMNLEKKRTKGM-----LLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFY

Query:  QSLFDN
        Q LF +
Subjt:  QSLFDN

AT3G63090.1 Ubiquitin carboxyl-terminal hydrolase family protein1.1e-1438.46Show/hide
Query:  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISII
        + R T R+ A ++EE+ +    EP+ V +L +LLMMA +  ++  KL  ++R+FG P+D+L+++V KY + FR+     +  S  +ELVSW P+ A S I
Subjt:  YFRLTKRMMALVEEEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISII

Query:  ESSA
        E  A
Subjt:  ESSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACCACGAGCAGCAATATCTCTCCAACGGGATTTGAGCAGCCAAGCCCTAGCGGCTAGCACACAAACCTTCCTCCTTCGATGGTCTTGCCTGTTTGGATTGGATTT
TGTTGATTTTGTTTATGGGTGTTTGTTGATTGGAATGGCTTCTGCTGCTGCAATTTGGGGTTTATGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTT
CTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAG
GAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCAATTGGCTAAGTTGCTGATGATGGCTTCAAATCATAGACTAAATGTTGTAAAGCTTGGTGAATT
GAGGCGGAATTTTGGGCTTCCAGATGACTACTTGATAAGAATCGTTCCTAAATATTCTGATATGTTTCGAATTGTTAACTATAGCGGAAAAAGGAACTCAATGGAAATAG
AACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCATAATAGAATCTTCAGCTTGCAAACATGGGGTTGAGCAGTTTTCTCCGGCTCACTGCCAACAACTTGGCAAGGAA
TTCGGTCAGCTGCCAACGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTCTGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAA
TGGATCAGAGGGACTTCATGAGTATAACAAGCGAAATCATTTAATGAATCTAGAAAAGAAGAGAACGAAGGGCATGCTTTTGGGTAGAACAGAAAAGAACAAAAGGAAAG
ACTTTGAACCAGATGATCCTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAGAGATTCTATCAATCTCTCTTTGATAATGGTGCTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAACCACGAGCAGCAATATCTCTCCAACGGGATTTGAGCAGCCAAGCCCTAGCGGCTAGCACACAAACCTTCCTCCTTCGATGGTCTTGCCTGTTTGGATTGGATTT
TGTTGATTTTGTTTATGGGTGTTTGTTGATTGGAATGGCTTCTGCTGCTGCAATTTGGGGTTTATGGCTCTCATCTCCTTATGCCTTCAAATACTTCCTTAGGAATTTTT
CTCTATGGTCAATGAAGAAAGACCCCGACCTTGAATCAGCTCTATCTCTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATGATGGCTTTGGTTGAG
GAGGAAGAAACTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCAATTGGCTAAGTTGCTGATGATGGCTTCAAATCATAGACTAAATGTTGTAAAGCTTGGTGAATT
GAGGCGGAATTTTGGGCTTCCAGATGACTACTTGATAAGAATCGTTCCTAAATATTCTGATATGTTTCGAATTGTTAACTATAGCGGAAAAAGGAACTCAATGGAAATAG
AACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCATAATAGAATCTTCAGCTTGCAAACATGGGGTTGAGCAGTTTTCTCCGGCTCACTGCCAACAACTTGGCAAGGAA
TTCGGTCAGCTGCCAACGAAATTGAACACATTGCTGCTTAAGCACCCTGGCATATTCTCTGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGATATAA
TGGATCAGAGGGACTTCATGAGTATAACAAGCGAAATCATTTAATGAATCTAGAAAAGAAGAGAACGAAGGGCATGCTTTTGGGTAGAACAGAAAAGAACAAAAGGAAAG
ACTTTGAACCAGATGATCCTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAGAGATTCTATCAATCTCTCTTTGATAATGGTGCTGCATAA
Protein sequenceShow/hide protein sequence
MQPRAAISLQRDLSSQALAASTQTFLLRWSCLFGLDFVDFVYGCLLIGMASAAAIWGLWLSSPYAFKYFLRNFSLWSMKKDPDLESALSLYLHNDEYYFRLTKRMMALVE
EEETVKDMQEPIFVEQLAKLLMMASNHRLNVVKLGELRRNFGLPDDYLIRIVPKYSDMFRIVNYSGKRNSMEIELVSWKPELAISIIESSACKHGVEQFSPAHCQQLGKE
FGQLPTKLNTLLLKHPGIFSVSNKYQIYTVLLREGYNGSEGLHEYNKRNHLMNLEKKRTKGMLLGRTEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQSLFDNGAA