; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011664 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011664
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:30153946..30158347
RNA-Seq ExpressionLag0011664
SyntenyLag0011664
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.4e-1070.21Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICT ESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.2e-0973.33Show/hide
Query:  DCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI TSESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-0575.76Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWE
        +RDCPLICT ESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1068.09Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        +RDCPL CT ESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-0650.77Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPLGPTGSSFRALRK
        +RDCPLICT ESG  ADSI L FWGQDRVG       RW  +  D   S  PLG   ++  A R+
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPLGPTGSSFRALRK
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.2e-1070.21Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICT ESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5A7U202 Reverse transcriptase8.6e-0675.76Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWE
        +RDCPLICT ESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein5.7e-1073.33Show/hide
Query:  DCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI TSESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein5.2e-1168.09Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        +RDCPL CT ESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5D3CBX3 Reverse transcriptase1.7e-0650.77Show/hide
Query:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPLGPTGSSFRALRK
        +RDCPLICT ESG  ADSI L FWGQDRVG       RW  +  D   S  PLG   ++  A R+
Subjt:  MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPLGPTGSSFRALRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGAGTGAGAGTGGCTTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCCGATATTAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGAAAGAAGATCCTCCAGTTAATCCTTAGAG
TTTTTGCTCCCACAAGCTCCCAACGCAAAATCCTGTTCGAGAATACCGGTGCGATTGCTTGGTGGTGTTCAAGGGTGATTTTCAGCAAGATCAAGCCCATTGCCACCGGT
CAAACAGAGCTCCCATCGTCTCTTCTTCCATCTAATTCGAGTTCCATCGTCGTTGTTAGTCGTAGTCCATCACCGCCTTCTAAAACGAAGCAACCGGCAAGGGTTGGTTG
GGTTGGGAATTTGTCCAACTTGAAATTTCGGGTTGGTCCAAAATTTGATCCCAACCCGGCTCGAACCGACCCGTGTACAACCCTAGCAAATTGGAGCTTGGATCACGACA
AAGAGACTAAAGCCCTTAGGCGTCTCGACGCTAGCATTCCTTATTCAGAAAGGCGCGAAATTGTCGCAGCGTCGAGACGCTGCGACATTAGCGTCTTGACGCTGCTAGAA
TTCCATATCAGAACACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGAGTGAGAGTGGCTTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCCGATATTAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGAAAGAAGATCCTCCAGTTAATCCTTAGAG
TTTTTGCTCCCACAAGCTCCCAACGCAAAATCCTGTTCGAGAATACCGGTGCGATTGCTTGGTGGTGTTCAAGGGTGATTTTCAGCAAGATCAAGCCCATTGCCACCGGT
CAAACAGAGCTCCCATCGTCTCTTCTTCCATCTAATTCGAGTTCCATCGTCGTTGTTAGTCGTAGTCCATCACCGCCTTCTAAAACGAAGCAACCGGCAAGGGTTGGTTG
GGTTGGGAATTTGTCCAACTTGAAATTTCGGGTTGGTCCAAAATTTGATCCCAACCCGGCTCGAACCGACCCGTGTACAACCCTAGCAAATTGGAGCTTGGATCACGACA
AAGAGACTAAAGCCCTTAGGCGTCTCGACGCTAGCATTCCTTATTCAGAAAGGCGCGAAATTGTCGCAGCGTCGAGACGCTGCGACATTAGCGTCTTGACGCTGCTAGAA
TTCCATATCAGAACACGCGTGTTTAGAGGCAGCGTCTCGACGCTACGATAA
Protein sequenceShow/hide protein sequence
MRDCPLICTSESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPLGPTGSSFRALRKKILQLILRVFAPTSSQRKILFENTGAIAWWCSRVIFSKIKPIATG
QTELPSSLLPSNSSSIVVVSRSPSPPSKTKQPARVGWVGNLSNLKFRVGPKFDPNPARTDPCTTLANWSLDHDKETKALRRLDASIPYSERREIVAASRRCDISVLTLLE
FHIRTRVFRGSVSTLR