CuGenDBv2

Gene ID	Lag0011678
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Integrase
Genome location	chr1:30602721..30606695
RNA-Seq Expression	Lag0011678
Synteny	Lag0011678
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038926.1 integrase [Cucumis melo var. makuwa]

2.7e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

KAA0039947.1 integrase [Cucumis melo var. makuwa]

2.7e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

KAA0051300.1 integrase [Cucumis melo var. makuwa]

9.4e-35

68.38

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Query:  SSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKL
        SSSSS+  PTS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RTKL
Subjt:  SSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKL

Query:  KQNGEVEKYKARLIVKG
        K +G VEKYKARL+VKG
Subjt:  KQNGEVEKYKARLIVKG

KAA0060377.1 integrase [Cucumis melo var. makuwa]

2.7e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

KAA0060708.1 integrase [Cucumis melo var. makuwa]

1.2e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+P  TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKW  VMDQEIDA+RRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U800 Integrase

4.6e-35

68.38

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Query:  SSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKL
        SSSSS+  PTS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RTKL
Subjt:  SSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKL

Query:  KQNGEVEKYKARLIVKG
        K +G VEKYKARL+VKG
Subjt:  KQNGEVEKYKARLIVKG

A0A5A7UZJ8 Integrase

1.3e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

A0A5A7UZM3 Integrase

6.0e-35

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+P  TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKW  VMDQEIDA+RRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

A0A5D3BQ81 Integrase

1.3e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

A0A5D3E3T2 Integrase

1.3e-34

67.23

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Query:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT
        M SSSSS+   TS +E SPR+ RSIQEIY+ + R+ +D   +FALFA VDP+ F+EAIQDEKWK  MDQEIDAIRRNETWEL++LP +++ LGVKWV RT
Subjt:  MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRT

Query:  KLKQNGEVEKYKARLIVKG
        KLK +G VEKYKARL+VKG
Subjt:  KLKQNGEVEKYKARLIVKG

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-04

30.17

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Query:  PTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAI---QDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGE
        PT  EE      RS +   + SRR    ++V   +  D +P   +E +   +  +    M +E++++++N T++LV+LP+ ++ L  KWV + K   + +
Subjt:  PTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAI---QDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGE

Query:  VEKYKARLIVKGVFKK
        + +YKARL+VKG  +K
Subjt:  VEKYKARLIVKGVFKK

P92520 Uncharacterized mitochondrial protein AtMg00820

2.4e-09

46.03

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Query:  AIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG
        A++D  W   M +E+DA+ RN+TW LV  P ++  LG KWV +TKL  +G +++ KARL+ KG
Subjt:  AIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.5e-06

32.09

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Query:  ASSSSSSPRPTSV--------------EETSPRKTRSIQEIYDASRRMTEDDH-VDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLP
        ASSSS+SP P S+                 +P  T S+     A        + +  +L A+ +P    +A++DE+W+  M  EI+A   N TW+LV  P
Subjt:  ASSSSSSPRPTSV--------------EETSPRKTRSIQEIYDASRRMTEDDH-VDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLP

Query:  ESRKTL-GVKWVSRTKLKQNGEVEKYKARLIVKG
         S  T+ G +W+   K   +G + +YKARL+ KG
Subjt:  ESRKTL-GVKWVSRTKLKQNGEVEKYKARLIVKG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.2e-05

30.47

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Query:  ASSSSSSPRP--------TSVEETSPRKTRSI-QEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTL
        +SS+S+ P P          V   +P  T S+     D  R+  +      +L A+ +P    +A++D++W+  M  EI+A   N TW+LV  P    T+
Subjt:  ASSSSSSPRP--------TSVEETSPRKTRSI-QEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTL

Query:  -GVKWVSRTKLKQNGEVEKYKARLIVKG
         G +W+   K   +G + +YKARL+ KG
Subjt:  -GVKWVSRTKLKQNGEVEKYKARLIVKG

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.5e-09

31.88

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Query:  MASSSSSSPRPTSVEETSPRKTRS---IQEIYDAS-RRMTEDDHVDFALFADVDPIH---------------FEEAIQDEKWKAVMDQEIDAIRRNETWE
        M S++  +  P     TS R+TR    +Q+ Y  S   +T  D   F  +  V P++               + EA +   W   MD EI A+    TWE
Subjt:  MASSSSSSPRPTSVEETSPRKTRS---IQEIYDAS-RRMTEDDHVDFALFADVDPIH---------------FEEAIQDEKWKAVMDQEIDAIRRNETWE

Query:  LVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG
        +  LP ++K +G KWV + K   +G +E+YKARL+ KG
Subjt:  LVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.7e-10

46.03

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Query:  AIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG
        A++D  W   M +E+DA+ RN+TW LV  P ++  LG KWV +TKL  +G +++ KARL+ KG
Subjt:  AIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGEVEKYKARLIVKG

Sequences

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CDS sequence

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ATGGCTTCATCTTCCTCTTCATCTCCACGTCCCACAAGTGTTGAAGAAACTTCGCCTAGGAAAACAAGAAGTATTCAAGAGATTTATGATGCTTCAAGAAGGATGACAGA
AGATGATCATGTTGATTTTGCTTTATTTGCAGACGTGGATCCTATACATTTTGAAGAGGCGATTCAAGATGAAAAATGGAAAGCTGTAATGGATCAAGAGATCGATGCAA
TTAGAAGAAATGAAACATGGGAGTTAGTACAACTACCAGAGAGCAGAAAAACTCTTGGAGTAAAATGGGTGTCTAGAACAAAATTGAAGCAAAATGGTGAAGTTGAGAAG
TACAAGGCAAGACTCATTGTCAAAGGAGTCTTCAAGAAGCTTTGGTCTAGAAGGTTTGTTCTTCAGAAAGATTTGGATTTTTCTGGATGGATCGAGGTAAACTTCAGTCT
TCAGGTTTGCAGGAGGTTCAGAGCTTCAGTCTTCGACTTGGTAGGAGGACTTGAAGAGGATCTGAACTTCGATCTTCAGTTCTGCATTTTGCGGCAGGATTTGAGGGTGA
TCGGAACCTTGTTCTTCAGTTTTGTAGCTGAATCTGGCGAGGATCTGAGCTTCGATCTTCGTTCTGCAGTGGGTTTTGAAGAGGATCTGAACTTCGATCTTCGGTTTTGC
AGAAGGAGCTTCAATCTTCGCAAGTCTACGACACCTACTGACGGCCACCGTTTCAGCAACCAGCCGATCCGTAAGGCACGAGAGGTAGCAACGCTTTGCCGTACGACGGG
CTCGTCTTCGTGCTGTGGCGGCGCCGGCGAGAGGGTGAGGGAGGCGAGCGGGAATAATTATATTCAACCGCTCGTATTGCACCTAACACTTGCTTGCTACCTAGAAGGCA
GTGATCAACCCCTGATTCAGGCGGAATCCAGGATGGTCACTCGCCCTTCACGTCCTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTCGC
CCTTCACGTCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAAGCCGATCACTTTATATTTTGTGATTCAATAA

mRNA sequence

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Protein sequence

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MASSSSSSPRPTSVEETSPRKTRSIQEIYDASRRMTEDDHVDFALFADVDPIHFEEAIQDEKWKAVMDQEIDAIRRNETWELVQLPESRKTLGVKWVSRTKLKQNGEVEK
YKARLIVKGVFKKLWSRRFVLQKDLDFSGWIEVNFSLQVCRRFRASVFDLVGGLEEDLNFDLQFCILRQDLRVIGTLFFSFVAESGEDLSFDLRSAVGFEEDLNFDLRFC
RRSFNLRKSTTPTDGHRFSNQPIRKAREVATLCRTTGSSSCCGGAGERVREASGNNYIQPLVLHLTLACYLEGSDQPLIQAESRMVTRPSRPASGSDQPLIQAEFRMVTR
PSRLASGSDQPLIQAEFKPITLYFVIQ

Lag0011678 (gene) of Sponge gourd (AG-4) v1 genome