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Lag0011701 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011701
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:31276385..31277086
RNA-Seq ExpressionLag0011701
SyntenyLag0011701
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]1.5e-0732.35Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K+N DA+W  +  +GG+GW+V DS G  + AG K   +  S L +E KAI E    LL    + L K+ VESDS + I +L     I     ++  D++
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAH----FLARRANAH
             F   +  +  R+ N  AH    F++R    H
Subjt:  VAAELFGEVMSRFNRRDSNLEAH----FLARRANAH

XP_009141463.1 uncharacterized protein LOC103865423 [Brassica rapa]1.9e-0733.86Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K NTD SWS+E GVGG+GW++ D  G+ + AG KK+    S L  E +AI   ++  LV FG    K+ +E+DS     +LN   EI+     +  D+ 
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAHFLAR
         +    G     +  R  N  A+ +A+
Subjt:  VAAELFGEVMSRFNRRDSNLEAHFLAR

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.6e-0946.91Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEIL
        K+NTDASWSEE+ VGG+GWI+ D  G  +LAG  K+++K  I  LEL  I  GL+ + ++  +P   I +ESDS E I ++
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEIL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.0e-0835.16Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVEV
        K+NT+A+W  +   GG+GWI+ D  G  I A  + ++ + +I  LE+ AI EGLR +  +   P   I +ESDS EAI +L+   +  +E   +  ++  
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVEV

Query:  AAELFGEVMSRFNRRDSNLEAHFLARRA
          +    V  R   R++N  AH LARRA
Subjt:  AAELFGEVMSRFNRRDSNLEAHFLARRA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.5e-0935.34Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPK-----IIVESDSAEAIEILNHASEIFSEGRSVA
        K+NTDA+W  +   GG+GWI+ D  G  I A  + ++ + +I  LE+ AI EGLR +  +   P+ +     I +ESDS EAI +L+   +  +E   + 
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPK-----IIVESDSAEAIEILNHASEIFSEGRSVA

Query:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA
         ++    E    V  R   R++N  AH LARRA
Subjt:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA

TrEMBL top hitse value%identityAlignment
A0A2H5Q972 Uncharacterized protein (Fragment)1.2e-0731.58Show/hide
Query:  QKAAIKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVA
        Q+  +KINTDA+ + EK + GLG ++ D NG       K  +   S+   E +A+  GL+   V     +  +I+ESDS E + ++N+     SE   V 
Subjt:  QKAAIKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVA

Query:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA
        ++++   E F  V   +  R  N  AH LA+ A
Subjt:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA

A0A6J1CP26 uncharacterized protein LOC1110134121.4e-0835.16Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVEV
        K+NT+A+W  +   GG+GWI+ D  G  I A  + ++ + +I  LE+ AI EGLR +  +   P   I +ESDS EAI +L+   +  +E   +  ++  
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVEV

Query:  AAELFGEVMSRFNRRDSNLEAHFLARRA
          +    V  R   R++N  AH LARRA
Subjt:  AAELFGEVMSRFNRRDSNLEAHFLARRA

A0A6J1CQG0 uncharacterized protein LOC1110132167.6e-1046.91Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEIL
        K+NTDASWSEE+ VGG+GWI+ D  G  +LAG  K+++K  I  LEL  I  GL+ + ++  +P   I +ESDS E I ++
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEIL

A0A6J1DSV1 uncharacterized protein LOC1110236081.7e-0935.34Show/hide
Query:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPK-----IIVESDSAEAIEILNHASEIFSEGRSVA
        K+NTDA+W  +   GG+GWI+ D  G  I A  + ++ + +I  LE+ AI EGLR +  +   P+ +     I +ESDS EAI +L+   +  +E   + 
Subjt:  KINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPK-----IIVESDSAEAIEILNHASEIFSEGRSVA

Query:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA
         ++    E    V  R   R++N  AH LARRA
Subjt:  IDVEVAAELFGEVMSRFNRRDSNLEAHFLARRA

A0A6J5UV01 Reverse transcriptase domain-containing protein7.1e-0832.35Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K+N DA+W  +  +GG+GW+V DS G  + AG K   +  S L +E KAI E    LL    + L K+ VESDS + I +L     I     ++  D++
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAH----FLARRANAH
             F   +  +  R+ N  AH    F++R    H
Subjt:  VAAELFGEVMSRFNRRDSNLEAH----FLARRANAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-0727.13Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K NTDA+W  E    G+GWI+ + +G  +  G + + +  ++L  EL+A+   +   + +F     +II ESD+   + +LN + + +   +    D++
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAHFLARRA
             F EV   F  R  N  A  +AR +
Subjt:  VAAELFGEVMSRFNRRDSNLEAHFLARRA

AT4G29090.1 Ribonuclease H-like superfamily protein1.2e-0731.78Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K NTDA+W+ +    G+GW++ +  G     G + + K  S+L  EL+A+   +  L     N    +I ESDS   IEILN+  EI+   +    D++
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAHFLARRA
             F EV   F  R+ N  A  +AR +
Subjt:  VAAELFGEVMSRFNRRDSNLEAHFLARRA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0426.87Show/hide
Query:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE
        +K N DAS  E   V GLGWI+ +S G+ I  G  K Q + +    E   +   +  +   +G    K+I E D+     ++N  S      +     ++
Subjt:  IKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEIFSEGRSVAIDVE

Query:  VAAELFGEVMSRFNRRDSNLEAHFLARRANAHET
             F  +   F  R+ N  A FLA++A    T
Subjt:  VAAELFGEVMSRFNRRDSNLEAHFLARRANAHET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCTCTTAGCATTATCTCGAGCATTTGGAATCATAGGAATTTGGTGAAGCAAAAAGCGGCAATAAAAATAAACACAGATGCATCATGGTCTGAAGAGAAAGGGGT
TGGGGGTTTAGGATGGATAGTTCATGACTCAAATGGATCTTTTATCTTAGCTGGTTTCAAGAAAGTACAAAAGAAATGGTCGATCCTTTGCCTGGAATTGAAAGCCATCG
GGGAAGGTCTGAGATGCTTACTTGTCAAATTTGGAAATCCTCTCCCCAAAATCATCGTGGAATCGGACTCAGCAGAGGCGATAGAAATTCTCAACCATGCGTCTGAAATC
TTCTCGGAAGGAAGATCAGTGGCGATCGATGTTGAGGTTGCGGCAGAGCTTTTCGGCGAGGTGATGTCCAGATTCAACCGACGGGATTCCAACTTAGAAGCGCACTTTCT
GGCGCGAAGGGCCAATGCTCACGAGACGGTGGGTGGGTCTGATACAGGGTTTTTGGACTCTTCCAATTCGAAAGAGAACTTTTTTTGTATGGCTATAATGCCCCCTAGTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCTCTTAGCATTATCTCGAGCATTTGGAATCATAGGAATTTGGTGAAGCAAAAAGCGGCAATAAAAATAAACACAGATGCATCATGGTCTGAAGAGAAAGGGGT
TGGGGGTTTAGGATGGATAGTTCATGACTCAAATGGATCTTTTATCTTAGCTGGTTTCAAGAAAGTACAAAAGAAATGGTCGATCCTTTGCCTGGAATTGAAAGCCATCG
GGGAAGGTCTGAGATGCTTACTTGTCAAATTTGGAAATCCTCTCCCCAAAATCATCGTGGAATCGGACTCAGCAGAGGCGATAGAAATTCTCAACCATGCGTCTGAAATC
TTCTCGGAAGGAAGATCAGTGGCGATCGATGTTGAGGTTGCGGCAGAGCTTTTCGGCGAGGTGATGTCCAGATTCAACCGACGGGATTCCAACTTAGAAGCGCACTTTCT
GGCGCGAAGGGCCAATGCTCACGAGACGGTGGGTGGGTCTGATACAGGGTTTTTGGACTCTTCCAATTCGAAAGAGAACTTTTTTTGTATGGCTATAATGCCCCCTAGTT
AA
Protein sequenceShow/hide protein sequence
MKALSIISSIWNHRNLVKQKAAIKINTDASWSEEKGVGGLGWIVHDSNGSFILAGFKKVQKKWSILCLELKAIGEGLRCLLVKFGNPLPKIIVESDSAEAIEILNHASEI
FSEGRSVAIDVEVAAELFGEVMSRFNRRDSNLEAHFLARRANAHETVGGSDTGFLDSSNSKENFFCMAIMPPS