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Lag0011718 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011718
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr1:31596695..31597210
RNA-Seq ExpressionLag0011718
SyntenyLag0011718
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC20874.1 hypothetical protein L484_012950 [Morus notabilis]2.0e-0637.43Show/hide
Query:  MASASSSSSPNVDRLSTLPVATSTMTTPTATPGAPHRSSLNTSTPLSSTPTRPLNPNLPPFQSTLLPHPNLTSNTGFVNNTSVPTGCQYPPTQPSTLPFF
        MA+ ++S+SP+    ST+P ++S++         P++SS N +TP      R  N N      T +P  N  +      NT +PT   YP  Q + + F 
Subjt:  MASASSSSSPNVDRLSTLPVATSTMTTPTATPGAPHRSSLNTSTPLSSTPTRPLNPNLPPFQSTLLPHPNLTSNTGFVNNTSVPTGCQYPPTQPSTLPFF

Query:  PSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPYPPK-FLDTAQ
        P+Y P  P Y   QP+    P++   +T+KL+   YL+WKNQLLN IIA  ME FIN T  PP  FLD  Q
Subjt:  PSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPYPPK-FLDTAQ

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.2e-0752.56Show/hide
Query:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ
        +TL   P + NP   F PN   + + YP+L+ PLTIKL ++N  LWKNQLLN IIA  +E FI   TP P KFLD AQ
Subjt:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]8.9e-0751.28Show/hide
Query:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ
        +TL   P + NP   F PN   + + YP+L+ PLTIKL ++N  LWKNQL+N IIA  +E FI   TP P KFLD AQ
Subjt:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ

TXG69550.1 hypothetical protein EZV62_004485 [Acer yangbiense]2.2e-0545.68Show/hide
Query:  PTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNT-PYPPKFLDTAQ
        P  P T       NP+       Q  P   P++T  L IKL D NY+LWKNQLLN IIA  +E FI  T P PPK L+  Q
Subjt:  PTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNT-PYPPKFLDTAQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.3e-0542.86Show/hide
Query:  QYPPTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPY-PPKFLDTAQ
        Q+PP  P+ L       P  PF  N       +PTL  PL +KL+D+N+LLWKNQLLN +IA  +  +++ T   PP+FLD  Q
Subjt:  QYPPTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPY-PPKFLDTAQ

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE12.5e-0752.56Show/hide
Query:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ
        +TL   P + NP   F PN   + + YP+L+ PLTIKL ++N  LWKNQLLN IIA  +E FI   TP P KFLD AQ
Subjt:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ

A0A438KNU0 Uncharacterized protein4.3e-0751.28Show/hide
Query:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ
        +TL   P + NP   F PN   + + YP+L+ PLTIKL ++N  LWKNQL+N IIA  +E FI   TP P KFLD AQ
Subjt:  STLPFFP-SYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFI-NNTPYPPKFLDTAQ

A0A5C7IK20 Uncharacterized protein1.1e-0545.68Show/hide
Query:  PTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNT-PYPPKFLDTAQ
        P  P T       NP+       Q  P   P++T  L IKL D NY+LWKNQLLN IIA  +E FI  T P PPK L+  Q
Subjt:  PTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNT-PYPPKFLDTAQ

A0A6J1DQX7 uncharacterized protein LOC1110223156.2e-0642.86Show/hide
Query:  QYPPTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPY-PPKFLDTAQ
        Q+PP  P+ L       P  PF  N       +PTL  PL +KL+D+N+LLWKNQLLN +IA  +  +++ T   PP+FLD  Q
Subjt:  QYPPTQPSTLPFFPSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPY-PPKFLDTAQ

W9S1E8 Uncharacterized protein9.6e-0737.43Show/hide
Query:  MASASSSSSPNVDRLSTLPVATSTMTTPTATPGAPHRSSLNTSTPLSSTPTRPLNPNLPPFQSTLLPHPNLTSNTGFVNNTSVPTGCQYPPTQPSTLPFF
        MA+ ++S+SP+    ST+P ++S++         P++SS N +TP      R  N N      T +P  N  +      NT +PT   YP  Q + + F 
Subjt:  MASASSSSSPNVDRLSTLPVATSTMTTPTATPGAPHRSSLNTSTPLSSTPTRPLNPNLPPFQSTLLPHPNLTSNTGFVNNTSVPTGCQYPPTQPSTLPFF

Query:  PSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPYPPK-FLDTAQ
        P+Y P  P Y   QP+    P++   +T+KL+   YL+WKNQLLN IIA  ME FIN T  PP  FLD  Q
Subjt:  PSYNPVTPFYPNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPYPPK-FLDTAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGCATCGAGCTCATCATCTCCCAATGTTGATCGTCTATCGACTCTTCCGGTTGCCACCTCCACCATGACGACTCCTACAGCTACACCTGGTGCCCCTCACCG
CTCTAGTCTGAATACCTCTACTCCTCTTTCGTCAACCCCTACCAGGCCCTTAAACCCTAATCTTCCCCCGTTTCAATCAACTCTTCTCCCCCATCCTAACCTCACAAGCA
ACACAGGCTTCGTCAACAATACCTCTGTCCCAACTGGTTGTCAATACCCACCGACTCAACCCTCTACACTACCGTTCTTTCCTTCGTATAACCCCGTTACTCCATTTTAT
CCTAATGCTCAGCCCTCACCATCCCTGTATCCAACCCTAACCCCTCCCTTGACCATAAAGCTATCTGACTCAAATTACCTTCTCTGGAAGAACCAACTTCTTAACCACAT
TATTGCCTTCGATATGGAGAGTTTCATCAACAACACACCGTATCCACCAAAGTTCTTGGACACGGCTCAGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGCATCGAGCTCATCATCTCCCAATGTTGATCGTCTATCGACTCTTCCGGTTGCCACCTCCACCATGACGACTCCTACAGCTACACCTGGTGCCCCTCACCG
CTCTAGTCTGAATACCTCTACTCCTCTTTCGTCAACCCCTACCAGGCCCTTAAACCCTAATCTTCCCCCGTTTCAATCAACTCTTCTCCCCCATCCTAACCTCACAAGCA
ACACAGGCTTCGTCAACAATACCTCTGTCCCAACTGGTTGTCAATACCCACCGACTCAACCCTCTACACTACCGTTCTTTCCTTCGTATAACCCCGTTACTCCATTTTAT
CCTAATGCTCAGCCCTCACCATCCCTGTATCCAACCCTAACCCCTCCCTTGACCATAAAGCTATCTGACTCAAATTACCTTCTCTGGAAGAACCAACTTCTTAACCACAT
TATTGCCTTCGATATGGAGAGTTTCATCAACAACACACCGTATCCACCAAAGTTCTTGGACACGGCTCAGACTTAG
Protein sequenceShow/hide protein sequence
MASASSSSSPNVDRLSTLPVATSTMTTPTATPGAPHRSSLNTSTPLSSTPTRPLNPNLPPFQSTLLPHPNLTSNTGFVNNTSVPTGCQYPPTQPSTLPFFPSYNPVTPFY
PNAQPSPSLYPTLTPPLTIKLSDSNYLLWKNQLLNHIIAFDMESFINNTPYPPKFLDTAQT