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Lag0011728 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011728
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:31735264..31736329
RNA-Seq ExpressionLag0011728
SyntenyLag0011728
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RHN71616.1 putative transcription factor interactor and regulator CCHC(Zn) family [Medicago truncatula]2.6e-0844.87Show/hide
Query:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDE--ATLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIA
        +FI P N   LWP+    P+LP  +R +P RPK+ RR+D DE  +T S   +R Q   +C+RCK   HN+R+CKG  A
Subjt:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDE--ATLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIA

XP_027942524.1 uncharacterized protein LOC114196170 [Vigna unguiculata]6.5e-0735.04Show/hide
Query:  FWNAARATTKPEFDNIMAEIDIDEDFLSF--------------IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKC
        FWN      +     I  +++  ED++                I P+N   LWPKT    LLP   +  P RPK+ RRR+ DE  +SH K  +   I KC
Subjt:  FWNAARATTKPEFDNIMAEIDIDEDFLSF--------------IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKC

Query:  SRCKGTRHNVRSCKGSI
        S+CK   HN+RSC+  I
Subjt:  SRCKGTRHNVRSCKGSI

XP_031397476.1 uncharacterized protein LOC116208272 [Punica granatum]2.2e-0733.04Show/hide
Query:  FIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRSCKG-SIAQSSTRIKRDRTFMGLRIPITEVEI
        FIKP      W K+  +P+ P K++  P RPK+QR++  +E    +  +R      C +C G++HN+R+CKG SIA SS + +++ +     +PI     
Subjt:  FIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRSCKG-SIAQSSTRIKRDRTFMGLRIPITEVEI

Query:  GATIEGTMPESG
         A+ +GT    G
Subjt:  GATIEGTMPESG

XP_038707254.1 uncharacterized protein LOC120002562 [Tripterygium wilfordii]8.5e-0736.25Show/hide
Query:  IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRS--CKGSIAQSST
        ++P+   ++WPK+  + ++P K+R  P RPK++RRR+++E  L H   R+  +  C+ CK   HN R+  C G+ +Q ST
Subjt:  IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRS--CKGSIAQSST

XP_038709408.1 uncharacterized protein LOC120004210 [Tripterygium wilfordii]8.5e-0738.75Show/hide
Query:  IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRS--CKGSIAQSST
        I+P+   ++WPK+  + ++P K+R  P RPK++RRR+++E  L H   R+     C+ CKG  HN R+  C G+ +Q ST
Subjt:  IKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRS--CKGSIAQSST

TrEMBL top hitse value%identityAlignment
A0A1S3VU12 uncharacterized protein LOC1067784294.6e-0644Show/hide
Query:  FLSFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKCSRCKGTRHNVRSCK
        +   I P+N   LWP +   PLLP   +  P RPK+ RRR++DE  +SH K  +  +  KCS C    HNVRSCK
Subjt:  FLSFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKCSRCKGTRHNVRSCK

A0A2N9FES9 CCHC-type domain-containing protein4.1e-0729.41Show/hide
Query:  MFWNAARATTKPEFDNIMAEI-DID----------------------------EDFLSFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEA
        +FW AA+AT   EF+ +M+E+ ++D                            + +   I P+N  ++W KT   P+ P  +R  P RPK++R R+ DE 
Subjt:  MFWNAARATTKPEFDNIMAEI-DID----------------------------EDFLSFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEA

Query:  TLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIAQSS
               R     KC +C    HN RSCKG +  +S
Subjt:  TLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIAQSS

A0A396HGF0 Putative transcription factor interactor and regulator CCHC(Zn) family3.5e-0643.24Show/hide
Query:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKCSRCKGTRHNVRSCKG
        + I P N   LWP+   EP+LP K R +P RPK+ RR++ DE   ++ K +R Q   +C RCK   HN R+C G
Subjt:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGK-RRIQVITKCSRCKGTRHNVRSCKG

A0A396J0S1 Putative transcription factor interactor and regulator CCHC(Zn) family1.3e-0844.87Show/hide
Query:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDE--ATLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIA
        +FI P N   LWP+    P+LP  +R +P RPK+ RR+D DE  +T S   +R Q   +C+RCK   HN+R+CKG  A
Subjt:  SFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDE--ATLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIA

A0A6P8DW92 uncharacterized protein LOC1162082721.1e-0733.04Show/hide
Query:  FIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRSCKG-SIAQSSTRIKRDRTFMGLRIPITEVEI
        FIKP      W K+  +P+ P K++  P RPK+QR++  +E    +  +R      C +C G++HN+R+CKG SIA SS + +++ +     +PI     
Subjt:  FIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRSCKG-SIAQSSTRIKRDRTFMGLRIPITEVEI

Query:  GATIEGTMPESG
         A+ +GT    G
Subjt:  GATIEGTMPESG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTGGAATGCTGCGAGAGCCACTACAAAGCCTGAGTTTGACAATATTATGGCAGAAATTGACATTGATGAAGATTTTCTCTCCTTCATCAAACCGGTCAATGATCA
CTCTTTATGGCCAAAAACCACATTTGAACCTTTGCTACCACGCAAGATCCGAATGTCTCCTGATAGACCAAAAAGGCAGAGAAGAAGAGATCTTGACGAAGCCACATTGT
CTCATGGGAAGCGACGCATTCAGGTTATTACCAAGTGTAGCCGATGTAAAGGTACAAGACATAATGTTAGATCTTGTAAGGGGTCAATAGCACAAAGTTCAACAAGAATT
AAGAGAGATAGAACCTTCATGGGATTGAGAATTCCTATTACTGAGGTTGAAATTGGAGCTACTATTGAGGGAACGATGCCTGAAAGTGGGAGACAAAACAATGAAGGTGA
AAGACAGAGTGAAGAAGGAAATATTGGAACCCAGCAATCTACAAATCAACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTGGAATGCTGCGAGAGCCACTACAAAGCCTGAGTTTGACAATATTATGGCAGAAATTGACATTGATGAAGATTTTCTCTCCTTCATCAAACCGGTCAATGATCA
CTCTTTATGGCCAAAAACCACATTTGAACCTTTGCTACCACGCAAGATCCGAATGTCTCCTGATAGACCAAAAAGGCAGAGAAGAAGAGATCTTGACGAAGCCACATTGT
CTCATGGGAAGCGACGCATTCAGGTTATTACCAAGTGTAGCCGATGTAAAGGTACAAGACATAATGTTAGATCTTGTAAGGGGTCAATAGCACAAAGTTCAACAAGAATT
AAGAGAGATAGAACCTTCATGGGATTGAGAATTCCTATTACTGAGGTTGAAATTGGAGCTACTATTGAGGGAACGATGCCTGAAAGTGGGAGACAAAACAATGAAGGTGA
AAGACAGAGTGAAGAAGGAAATATTGGAACCCAGCAATCTACAAATCAACCATAG
Protein sequenceShow/hide protein sequence
MFWNAARATTKPEFDNIMAEIDIDEDFLSFIKPVNDHSLWPKTTFEPLLPRKIRMSPDRPKRQRRRDLDEATLSHGKRRIQVITKCSRCKGTRHNVRSCKGSIAQSSTRI
KRDRTFMGLRIPITEVEIGATIEGTMPESGRQNNEGERQSEEGNIGTQQSTNQP