CuGenDBv2

Gene ID	Lag0011748
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S13
Genome location	chr1:32162672..32167605
RNA-Seq Expression	Lag0011748
Synteny	Lag0011748
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0065886.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]

1.0e-07

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEILEDLYHLIK+ VSIRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

KAF6160459.1 hypothetical protein GIB67_019228 [Kingdonia uniflora]

1.0e-07

66.67

Show/hide

Query:  MGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSK
        M NH W+             GLAPEILEDLYHLIK+AV+IRKHLERNKKDKDSK
Subjt:  MGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSK

KEH29093.1 cytoplasmic ribosomal protein S13 [Medicago truncatula]

7.7e-08

85.37

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKFS
        IL   GLAPEI EDLYHLIK+AVSIRKHLERN+KDKDSKFS
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKFS

XP_019422293.1 PREDICTED: 40S ribosomal protein S13-like [Lupinus angustifolius]

1.3e-07

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AVSIRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

XP_020260777.1 40S ribosomal protein S13-like [Asparagus officinalis]

4.5e-08

61.29

Show/hide

Query:  GNIFIQHMGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        G+  I+H G    R  +  +  IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  GNIFIQHMGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

TrEMBL top hits

e value

%identity

Alignment

A0A072UJ10 Cytoplasmic ribosomal protein S13

3.7e-08

85.37

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKFS
        IL   GLAPEI EDLYHLIK+AVSIRKHLERN+KDKDSKFS
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKFS

A0A5A7VHP7 40S ribosomal protein S13-like

4.9e-08

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEILEDLYHLIK+ VSIRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

A0A5P1F4Y5 Ribosomal_S13_N domain-containing protein

2.2e-08

61.29

Show/hide

Query:  GNIFIQHMGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        G+  I+H G    R  +  +  IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  GNIFIQHMGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

A0A6A5LRG2 Putative ribosomal protein S15

6.4e-08

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AVSIRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

A0A7J7MZT0 AAA_11 domain-containing protein

4.9e-08

66.67

Show/hide

Query:  MGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSK
        M NH W+             GLAPEILEDLYHLIK+AV+IRKHLERNKKDKDSK
Subjt:  MGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSK

SwissProt top hits

e value

%identity

Alignment

P59223 40S ribosomal protein S13-1

6.6e-10

82.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

P59224 40S ribosomal protein S13-2

6.6e-10

82.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

P62299 40S ribosomal protein S13

2.5e-09

77.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   G+APEI EDLYHLIK+AV+IRKHLERN+KDKDSK+
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

P62300 40S ribosomal protein S13

2.5e-09

77.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   G+APEI EDLYHLIK+AV+IRKHLERN+KDKDSK+
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

P62302 40S ribosomal protein S13

2.9e-10

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AVSIRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

4.7e-11

82.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

AT4G00100.1 ribosomal protein S13A

4.7e-11

82.5

Show/hide

Query:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF
        IL   GLAPEI EDLYHLIK+AV+IRKHLERN+KDKDSKF
Subjt:  ILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTACTATGGAAACATATTCATCCAGCACATGGGTAATCACCTATGGAGGCATTTGGTGGACCGGGAGGAAAGCATCCTCAATGTTATTGGACTAGCTCCTGAAATCTT
GGAGGATCTTTACCATCTCATCAAGGAAGCGGTTTCAATCCGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGCGGTGAGGCCAACATGGAACAAA
TTCAACAAGTGTACCGCATGCTTGTGCACCCTCTCGCGGGTCCTAGGTGTAGAAGACGGGTTCGAGAGGGCAATTCAGTAAATAAACACTTCCCTCCAGTTGTACCTGAT
GGTGTACACCATAATGTCAAAGACATACCTCCTTTCACTCAGACACATGATGGTGCTACTCCTACCACTGGTGGTGAGGCCAACATGGAACAACTTCAACATATGTACCG
CCTACTTGTGCCACTTCTCGCGGTTGTACCTGATGGTGTACACCATAATGTCAAAGACATACCTTCTTTCACTCAGACACAGGATGGTGCTACTACTTCCACAGGGTATA
GAAGACAGGTTCAAAAGGACATTTTAGTAAATAAGCACTTCCCTCCAGTTGAACGTGATGATGTACACCATAATTTCAAAGACGTACCTCCTTTCACTCAGAAACGAGAT
GGTGCTACTTGTTCCACTTTAGTGGTTTCGATACCGATTCTTGGTACGCAATATTTTCACACCTCAATTACACCACACTGTCTGTACAATAGTGGTGAGGCCAACATGGA
ACAACTTCAACATATGTACCGCCTACTTGTGCCACTTCTCGCGGATACTTGGTGTAGAAGACGAGATGGTGCTACTCCTTCCACTCTAGTGGTTTTGATATCGATTCCTG
ATATGCAATATTTTCACACCTCAATTACACCAAACTATCTGTACAATAGCGGTGAGGCCAACATGGTACAAATTCAACAAATGTACCGCATGCTTGTGCCACCTCTCGCG
GGTCCTAGGTGTAGAAGACGGGTTCGAGAAGGCAATTCAAATAGTAAACACTTCCTTCCAGTTGTACCTGATGGTGTACACCATAATGTCAAAGACATACCTCCTTTTAT
TCAGACACAGGATGGTGCTACTCCTTCCACTGGGTATAGAAGACAGGTTCAAGAGGACATTTTAGTAAATAAGCACTTCCCTCCAGTTGAACGTGATGATGTACACCATA
ATGTCAAAGACGTACCTCCTTTCACTCAGAAACGAGATGGTGCTACTTTTTCCACTTTAGTGGTTTCGATACCGATTCTTGGTATGCAATATTTTCACACCTCAATTATA
CCACACTATATGTACAATAGTGGTGAGGCCAACATGGAACAACTTCAACATATGTACCGCCTACTTGTGCCACTTCTTGCGGATACTTGGTGTAGAAGACGAGTTCGAGA
AGAATTTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MYYGNIFIQHMGNHLWRHLVDREESILNVIGLAPEILEDLYHLIKEAVSIRKHLERNKKDKDSKFSGEANMEQIQQVYRMLVHPLAGPRCRRRVREGNSVNKHFPPVVPD
GVHHNVKDIPPFTQTHDGATPTTGGEANMEQLQHMYRLLVPLLAVVPDGVHHNVKDIPSFTQTQDGATTSTGYRRQVQKDILVNKHFPPVERDDVHHNFKDVPPFTQKRD
GATCSTLVVSIPILGTQYFHTSITPHCLYNSGEANMEQLQHMYRLLVPLLADTWCRRRDGATPSTLVVLISIPDMQYFHTSITPNYLYNSGEANMVQIQQMYRMLVPPLA
GPRCRRRVREGNSNSKHFLPVVPDGVHHNVKDIPPFIQTQDGATPSTGYRRQVQEDILVNKHFPPVERDDVHHNVKDVPPFTQKRDGATFSTLVVSIPILGMQYFHTSII
PHYMYNSGEANMEQLQHMYRLLVPLLADTWCRRRVREEF

Lag0011748 (gene) of Sponge gourd (AG-4) v1 genome