CuGenDBv2

Gene ID	Lag0011757
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	chr1:32325807..32327732
RNA-Seq Expression	Lag0011757
Synteny	Lag0011757
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596894.1 hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-44

79.86

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC-SSGSSESESEESSDDS--SDN
        VLGRVKDFLGV+SEANKKLQ+DAKD+AEKYDIEAL+G+ESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VIPL C SS SSESESEESSDDS  SDN
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC-SSGSSESESEESSDDS--SDN

Query:  NNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAK
        N++DNEKSD+QN+D GNR SVKLKRSKSR+ + RS+SK KEI +
Subjt:  NNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAK

XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]

1.6e-44

80.69

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRVKDFLGVISEANKKLQ+D+K+NAEKYDIEALDGNESEVI+++LMLGIADLHTPEAV AAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        NDDNEKSDDQ TD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]

2.8e-44

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRV+DFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        N+DNEKSDDQNTD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]

1.6e-44

80.69

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRVKDFLGVISEANKKLQ+D+K+NAEKYDIEALDGNESEVI+++LMLGIADLHTPEAV AAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        NDDNEKSDDQ TD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

7.2e-48

84.83

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRVKDFLGVISEANKKLQ+DAKDNAEKYDIEALDGNES+VIE++LMLGIADLHTPEAVAAAES I+GNQ VIPLTCSS SSESESEESSDDS  S++N
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        NDDNEKSDDQNTD  NRSSVKLKRS SRK S RSKSKGK  ++ R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

8.0e-45

80.69

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRVKDFLGVISEANKKLQ+D+K+NAEKYDIEALDGNESEVI+++LMLGIADLHTPEAV AAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        NDDNEKSDDQ TD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

A0A1S3BJW4 uncharacterized protein LOC103490838

1.4e-44

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRV+DFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        N+DNEKSDDQNTD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

1.4e-44

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN
        VLGRV+DFLGVISEANKKLQ+D+K+NA+KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCS  SSESESEESSDDS  SD++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDS--SDNN

Query:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR
        N+DNEKSDDQNTD  NR SVKLKRS SRK S RSKSKGK  +K R
Subjt:  NDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFR

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

3.4e-43

81.43

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSS-ESESEESSDDS--SDN
        VLGRVKDFLGV+SEANKKLQ+DAKD+AEKYDIEAL+G+ESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VI L CSS SS ESESEESSDDS  SDN
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSS-ESESEESSDDS--SDN

Query:  NNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGK
        N+DDNEKSD+QNTD GNR SVKLKR KSRK + RS+SK K
Subjt:  NNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGK

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

8.8e-44

80.85

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSGSSESESEESSDDS--SD
        VLGRVKDFLGV+SEANKKLQ+DAKD+AEKYDIEAL+GNESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VIPL C  SS SSESESEESSDDS  SD
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSGSSESESEESSDDS--SD

Query:  NNNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGK
        NN++DNEKSD QNTD GNR SVKLKRSKSR+ + RS+S+ K
Subjt:  NNNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

1.1e-14

50.49

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Query:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDSSDNNND
        +LG++K FLGV++EANKK    ++ N E Y+IEAL GNESE+IEM+LMLG+ADL+TPEAV+AAE+ I G           G +    + SSDD SD+ ++
Subjt:  VLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDSSDNNND

Query:  DNE
          E
Subjt:  DNE

Sequences

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CDS sequence

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ATGGAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGGTTAGTCAAAAGTACAATTGTTTGACAGAGGATCCTCTCTATTGTAAAATAAGAACTGGGCTTGTTGCAAG
AGCTATGGATGGACATGAGTTGCAAGCGTTGGTCACTTCCTTTTCACTTGTTGCAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTGATATCAGAAGCTAATAAAAAGT
TGCAAGTGGATGCAAAGGACAATGCTGAAAAGTATGATATTGAAGCACTTGATGGCAATGAGTCAGAAGTCATTGAAATGAACCTGATGTTGGGTATCGCCGATCTTCAT
ACACCTGAAGCTGTGGCTGCTGCTGAATCTGTAATAGTTGGTAACCAGCATGTGATTCCATTGACTTGTAGCAGTGGTAGTAGTGAATCTGAGTCTGAAGAGAGTAGTGA
TGATAGTAGTGACAACAATAACGATGACAATGAAAAGAGTGACGATCAGAATACTGACAGTGGTAACAGATCGTCAGTTAAACTCAAAAGATCAAAGTCTAGAAAAATCA
GTCTTAGAAGTAAAAGTAAAGGAAAAGAGATAGCCAAATTTAGACATATTTGCCCCCTCTCCTTTTCTTTCTTGCCGGTTGGAGAAGACGTCGTCGACGATCCGCATGGT
GGAGAACAAACGGAGACGAGAGAGATGGAAGAGATCTGCTGTCCTTTCATGGAGGCTGAAGAGGGTTGCTGTCGAGAGAGAAGGAAAAAGAAAGAGATGGAGGGTGTGGC
TTGGCTTGTTTTAAAAGGATAA

mRNA sequence

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Protein sequence

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MENPLQNQLQKAKVSQKYNCLTEDPLYCKIRTGLVARAMDGHELQALVTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDGNESEVIEMNLMLGIADLH
TPEAVAAAESVIVGNQHVIPLTCSSGSSESESEESSDDSSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKEIAKFRHICPLSFSFLPVGEDVVDDPHG
GEQTETREMEEICCPFMEAEEGCCRERRKKKEMEGVAWLVLKG

Lag0011757 (gene) of Sponge gourd (AG-4) v1 genome