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Lag0011768 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011768
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr1:32518618..32519374
RNA-Seq ExpressionLag0011768
SyntenyLag0011768
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6734747.1 hypothetical protein I3842_01G285500 [Carya illinoinensis]5.5e-4144.29Show/hide
Query:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----
        MA  + +  P+ ++DY +PV  G  S I+  PINANNFELK  LI M +                       D ++          L +F   L +    
Subjt:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----

Query:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI
        W QS+ PGSI +W    + FL KFFPPAKT +LR+EIG F+Q   E L+EAWE YK+L+R+CPQH  PDWLQ+Q+FYNGLN  T TIVD A+ GT++SK 
Subjt:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI

Query:  VENARTLLED
         E A  LLE+
Subjt:  VENARTLLED

KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]5.5e-4144.29Show/hide
Query:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----
        MA  + +  P+ ++DY +PV  G  S I+  PINANNFELK  LI M +                       D ++          L +F   L +    
Subjt:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----

Query:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI
        W QS+ PGSI +W    + FL KFFPPAKT +LR+EIG F+Q   E L+EAWE YK+L+R+CPQH  PDWLQ+Q+FYNGLN  T TIVD A+ GT++SK 
Subjt:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI

Query:  VENARTLLED
         E A  LLE+
Subjt:  VENARTLLED

KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.5e-4642.98Show/hide
Query:  MQKNRDLALVPLDPEIERKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-------------------
        M++ R   ++P+DPEIER +  +RR   + + MA  + +  P+ ++DY +PV  G  S I+  PINANNFELK  LI M +                   
Subjt:  MQKNRDLALVPLDPEIERKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-------------------

Query:  ----DCLRRIAHRGSKFSLEIFSRHLEN----WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYP
            D ++          L +F   L +    W QS+ PGSI +W    + FL KFFPPAKT +LR+EIG F+Q   E L+EAWE YK+L+R+CPQH  P
Subjt:  ----DCLRRIAHRGSKFSLEIFSRHLEN----WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYP

Query:  DWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
        DWLQ+Q+FYNGLN  T TIVD A+ GT++SK  E A  LLE+
Subjt:  DWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]7.0e-5249.15Show/hide
Query:  LVPLDPEIERKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMARDCLRR-----IAHRGSKFSLEI-----
        L+PLDPEI+R     RR L+  +       +E PK IRDYFQP     Q GI+  PIN NNFELK GLIQMAR+   R       H+  +  LEI     
Subjt:  LVPLDPEIERKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMARDCLRR-----IAHRGSKFSLEI-----

Query:  -----------------FSRHLENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLF
                              ++W ++IPP SITTW+   QAFL K+FPPAK+ +LRTEIG F+Q  DEQL+EAWE YK+LLR+CPQH YPDWLQIQLF
Subjt:  -----------------FSRHLENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLF

Query:  YNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
        YNGL  +T +I+D  A G++ SK  + A T+LED
Subjt:  YNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]3.6e-4043.81Show/hide
Query:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----
        MA      +P+ ++DY +P+     SGI    INANNFELK  LI M +                       D ++          L +F   L +    
Subjt:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----

Query:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI
        W QS+ PGSIT+W    + FL KFFPPAKT +LR+EIG F+Q   E L+EAWE YK+L+R CPQH  PDWLQ+Q+FYNGLN  T TIVD A+ GT++SK 
Subjt:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI

Query:  VENARTLLED
         E A +LLE+
Subjt:  VENARTLLED

TrEMBL top hitse value%identityAlignment
A0A2I4F4C8 uncharacterized protein LOC1089953738.1e-3843.75Show/hide
Query:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----
        MA+      P+ ++DY +PV     SGI    INANNFELK  LI M +                       D ++     G    L +F   L +    
Subjt:  MANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----------------------DCLRRIAHRGSKFSLEIFSRHLEN----

Query:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI
        W QS+  GSIT+W    + FL KFFPPAKT +LR+EI  F+Q   E L+EAWE YK L+R CPQH  P+WLQ+Q+FYNGLN  T TIVD AA GT++SK 
Subjt:  WFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKI

Query:  VENARTLL
        +E A T L
Subjt:  VENARTLL

A0A3S3N117 Retrotrans_gag domain-containing protein1.8e-3738.52Show/hide
Query:  MQKNRDLALVPLDPEIERKISMIRRELKESIPMANPNPQEEP-KPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMARDCLR--------------
        M++N++L LVPLDPEIER +  +++E K+         +E+  + + DY  P+  G  S I    I ANNFE+K  +IQM    ++              
Subjt:  MQKNRDLALVPLDPEIERKISMIRRELKESIPMANPNPQEEP-KPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMARDCLR--------------

Query:  ------------RIAHRGSKFSLEIFSRH--LENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHR
                     +     +  L  FS     + W  S+P  +ITTWD   + FL KFFPP KTVK+R +I  F Q   E L+EAWE YKELLRKCP H 
Subjt:  ------------RIAHRGSKFSLEIFSRH--LENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHR

Query:  YPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
         P W+Q+Q FYNGL   T T +D A  GT++ K  E A  L+E+
Subjt:  YPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129453.6e-3839.69Show/hide
Query:  MQKNRDLALVPLDPEIERKISMIRRE------LKESIPMANPN--------PQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----
        MQ+  +L LVP DP+IER     RRE      L +++   N N          E  + +RDY  P+ QG    I    INANNFE+K   IQM +     
Subjt:  MQKNRDLALVPLDPEIERKISMIRRE------LKESIPMANPN--------PQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----

Query:  -------------------DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWE
                           D  +          L +F   L    ++W  S+P GSITTW+   Q FL KFFPPAKT K+R +I  F Q   E L+EAWE
Subjt:  -------------------DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWE

Query:  CYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
         +KELLR+CP H  PDWLQ+Q FYNGL  +  TI+D AA G ++SK   +A  LLE+
Subjt:  CYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

A0A6J0ZYV0 uncharacterized protein LOC1104134134.7e-3839.69Show/hide
Query:  MQKNRDLALVPLDPEIERKISMIRRE------LKESIPMANPN--------PQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----
        MQ+  +L LVP DP+IER     RRE      L +++   N N          E  + +RDY  P+ QG    I    INANNFE+K   IQM +     
Subjt:  MQKNRDLALVPLDPEIERKISMIRRE------LKESIPMANPN--------PQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR-----

Query:  -------------------DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWE
                           D  +          L +F   L    ++W  S+P GSITTW+   Q FL KFFPPAKT K+R +I  F Q   E L+EAWE
Subjt:  -------------------DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWE

Query:  CYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
         +KELLR+CP H  PDWLQ+Q FYNGL  +  TI+D AA G ++SK   +A  LLE+
Subjt:  CYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

A0A7C9A3K2 Retrotrans_gag domain-containing protein (Fragment)1.7e-3539.33Show/hide
Query:  ALVPLDPEIE----RKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR----------------------
        ALVP DPEIE    R+ S  RR+ +    MA  N     + +RDY  P   G  S IV   + ANNFEL   LI                          
Subjt:  ALVPLDPEIE----RKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMAR----------------------

Query:  -DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWL
         D ++          L +F   L     +W Q+  P S TTWDA  +AFL K+FPP KT KLR EI  F Q+  E L+EAWE YK+L R+CP H  PDWL
Subjt:  -DCLRRIAHRGSKFSLEIFSRHL----ENWFQSIPPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWL

Query:  QIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED
         IQ FYNGL  +    +D AA G ++ K ++ A+ LLE+
Subjt:  QIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAGAATAGGGATTTGGCCTTAGTACCTTTGGATCCCGAGATCGAGAGGAAAATTAGCATGATTCGAAGGGAACTTAAAGAATCTATCCCAATGGCCAATCCAAA
TCCTCAAGAGGAGCCCAAACCCATTAGGGACTATTTTCAGCCCGTGTTTCAAGGGCAACAATCGGGGATTGTCTATGCCCCAATTAATGCCAACAATTTTGAGCTGAAAA
TTGGTCTCATTCAAATGGCTCGAGACTGCTTACGGAGGATCGCCCACAGAGGATCCAAATTCTCACTTGAAATCTTTTCTAGACATCTTGAGAATTGGTTTCAGTCTATT
CCACCTGGGAGCATTACCACCTGGGATGCTTTTGTCCAGGCATTCTTAAAGAAATTCTTCCCTCCTGCTAAGACAGTCAAGCTGAGGACCGAAATTGGGATGTTCCAGCA
ACAATTTGACGAGCAACTATTCGAGGCATGGGAGTGTTACAAAGAGTTGCTGAGGAAGTGCCCTCAGCATAGATATCCGGACTGGTTGCAAATCCAACTCTTTTACAATG
GTTTGAATCCCAATACTAATACCATTGTTGATGTAGCTGCAAGTGGGACTATGTTGTCCAAGATCGTGGAAAATGCACGTACATTACTAGAGGATGGCCACCAACAGTTA
TCAGTGGCCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAGAATAGGGATTTGGCCTTAGTACCTTTGGATCCCGAGATCGAGAGGAAAATTAGCATGATTCGAAGGGAACTTAAAGAATCTATCCCAATGGCCAATCCAAA
TCCTCAAGAGGAGCCCAAACCCATTAGGGACTATTTTCAGCCCGTGTTTCAAGGGCAACAATCGGGGATTGTCTATGCCCCAATTAATGCCAACAATTTTGAGCTGAAAA
TTGGTCTCATTCAAATGGCTCGAGACTGCTTACGGAGGATCGCCCACAGAGGATCCAAATTCTCACTTGAAATCTTTTCTAGACATCTTGAGAATTGGTTTCAGTCTATT
CCACCTGGGAGCATTACCACCTGGGATGCTTTTGTCCAGGCATTCTTAAAGAAATTCTTCCCTCCTGCTAAGACAGTCAAGCTGAGGACCGAAATTGGGATGTTCCAGCA
ACAATTTGACGAGCAACTATTCGAGGCATGGGAGTGTTACAAAGAGTTGCTGAGGAAGTGCCCTCAGCATAGATATCCGGACTGGTTGCAAATCCAACTCTTTTACAATG
GTTTGAATCCCAATACTAATACCATTGTTGATGTAGCTGCAAGTGGGACTATGTTGTCCAAGATCGTGGAAAATGCACGTACATTACTAGAGGATGGCCACCAACAGTTA
TCAGTGGCCATCTGA
Protein sequenceShow/hide protein sequence
MQKNRDLALVPLDPEIERKISMIRRELKESIPMANPNPQEEPKPIRDYFQPVFQGQQSGIVYAPINANNFELKIGLIQMARDCLRRIAHRGSKFSLEIFSRHLENWFQSI
PPGSITTWDAFVQAFLKKFFPPAKTVKLRTEIGMFQQQFDEQLFEAWECYKELLRKCPQHRYPDWLQIQLFYNGLNPNTNTIVDVAASGTMLSKIVENARTLLEDGHQQL
SVAI