; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011792 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011792
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr1:33034636..33035622
RNA-Seq ExpressionLag0011792
SyntenyLag0011792
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.4e-3934.41Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+S KV DG++ SFW D W+GN  L L  PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQHIWVGRYPKKV
        ST K   + +FW   S  W  +  R L D +   W ++ ++L T + N       W L  +  F + S+   ++    S  + +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A  +W    P+ + SL+
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-3935.58Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+  KV DG++ SFW D W+GN  L L+ PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV
        ST K   + D W    K W  +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S    +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  QA   W
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.9e-3137.37Show/hide
Query:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL
        KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D +   W ++ ++L T + N       W+L  +  F + S+
Subjt:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL

Query:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
          +LS    S  + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A   W
Subjt:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.4e-3935.58Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+  KV DG++ SFW D W+GN  L L  PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV
        ST K   + D W    K W  +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S    +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  QA   W
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.9e-3137.37Show/hide
Query:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL
        KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D +   W ++ ++L T + N       W+L  +  F + S+
Subjt:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL

Query:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
          +LS    S  + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A   W
Subjt:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.6e-3934.41Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+S KV DG++ SFW D W+GN  L L  PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQHIWVGRYPKKV
        ST K   + +FW   S  W  +  R L D +   W ++ ++L T + N       W L  +  F + S+   ++    S  + +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSS---SSPSAYSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A  +W    P+ + SL+
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein9.6e-4035.58Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+  KV DG++ SFW D W+GN  L L+ PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV
        ST K   + D W    K W  +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S    +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  QA   W
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.6e-3935.58Show/hide
Query:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL
        S+N   L  WL  F  L  +  LW+RLI +KY        P     +S+  PWK++       Y N+  KV DG++ SFW D W+GN  L L  PRL  L
Subjt:  SSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHL

Query:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV
        ST K   + D W    K W  +  R L D +   W ++ ++L T + +       W+L  +  F + S+   LS +S S    +  LY+ +W   +PKK 
Subjt:  STKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSA---YSELYQHIWVGRYPKKV

Query:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
        KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  QA   W
Subjt:  KFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein4.8e-3137.37Show/hide
Query:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL
        KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D +   W ++ ++L T + N       W+L  +  F + S+
Subjt:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL

Query:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
          +LS    S  + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A   W
Subjt:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein4.8e-3137.37Show/hide
Query:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL
        KV DG++ SFW D W+GN  L L+ PRL  LST K   + DFW   S  W  +  R L D +   W ++ ++L T + N       W+L  +  F + S+
Subjt:  KVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKKDAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSL

Query:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW
          +LS    S  + +  LY+ +W   +PKK KFF+W + H CINT D+LQKR     LSP+ C +C     +E + HLF  C Y+ + WS  +A   W
Subjt:  SNLLSS---SSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDKLQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCGGCCTTGGCATCATCAAACAGAAGAACTCTTCTCTCTTGGCTAAATGGATTTGGCGCTTTGAAAGCGAGAGGAGCTCTATGGCGTCGACTCATAGCTACTAA
ATATAGGTCCACCCATTATGATCTAAAGCCAGATACAAAATCTCTAAATTCATCCAAAGGTCCATGGAAATCTATTGATGGCTTGAAAATCCTGGTGTACTCCAATGTAT
CTATCAAGGTGGGCGATGGTAAAAACACTTCCTTCTGGAAGGACGAGTGGTCGGGGAATATGAGCCTCCAACTTTTGAATCCCAGATTACATCATCTATCGACCAAAAAA
GATGCTCCCATAGCTGATTTTTGGTGCTCCCAGTCTAAATCTTGGGTGTGCTACTCAAGGAGAAACCTCACAGACTCACAAGCTGAAGACTGGATCTCATTGGTATCCAA
CTTACAAACGGTGATTATTAATGATAGAAGCGACATTTGGTGGTGGGAATTAGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGC
CAAGTGCTTATTCAGAATTATACCAGCACATTTGGGTTGGTCGATACCCCAAAAAGGTAAAATTCTTCCTTTGGGAAGTTAGCCATTCTTGCATCAACACACATGACAAG
CTTCAAAAGAGATATCTTGGGACGATGTTATCGCCATCTTGCTGTCCATTATGTTATAGTTATAGTGATGAAGAATCATTGATCCACCTTTTCAGCAGCTGCTCATATGC
TTCAAAGTTTTGGAGCTTCCTACAAGCCACATTTGATTGGGTCTTCCCAAGACCGAGTCATATTCTATCCCTTCTATCTCTTACTCTTTTGGGTCATCCCTTCAAAAATG
ATAAAAAGATCCTATGTGTCATGTTCGGGCTTTCTTCTGGAACCTATGGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGACTAAAGACATTGGATTCTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCGGCCTTGGCATCATCAAACAGAAGAACTCTTCTCTCTTGGCTAAATGGATTTGGCGCTTTGAAAGCGAGAGGAGCTCTATGGCGTCGACTCATAGCTACTAA
ATATAGGTCCACCCATTATGATCTAAAGCCAGATACAAAATCTCTAAATTCATCCAAAGGTCCATGGAAATCTATTGATGGCTTGAAAATCCTGGTGTACTCCAATGTAT
CTATCAAGGTGGGCGATGGTAAAAACACTTCCTTCTGGAAGGACGAGTGGTCGGGGAATATGAGCCTCCAACTTTTGAATCCCAGATTACATCATCTATCGACCAAAAAA
GATGCTCCCATAGCTGATTTTTGGTGCTCCCAGTCTAAATCTTGGGTGTGCTACTCAAGGAGAAACCTCACAGACTCACAAGCTGAAGACTGGATCTCATTGGTATCCAA
CTTACAAACGGTGATTATTAATGATAGAAGCGACATTTGGTGGTGGGAATTAGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGC
CAAGTGCTTATTCAGAATTATACCAGCACATTTGGGTTGGTCGATACCCCAAAAAGGTAAAATTCTTCCTTTGGGAAGTTAGCCATTCTTGCATCAACACACATGACAAG
CTTCAAAAGAGATATCTTGGGACGATGTTATCGCCATCTTGCTGTCCATTATGTTATAGTTATAGTGATGAAGAATCATTGATCCACCTTTTCAGCAGCTGCTCATATGC
TTCAAAGTTTTGGAGCTTCCTACAAGCCACATTTGATTGGGTCTTCCCAAGACCGAGTCATATTCTATCCCTTCTATCTCTTACTCTTTTGGGTCATCCCTTCAAAAATG
ATAAAAAGATCCTATGTGTCATGTTCGGGCTTTCTTCTGGAACCTATGGTTGGAGCGTAATGGTCGCATTTTCAAGGACAAGACTAAAGACATTGGATTCTTCTTAG
Protein sequenceShow/hide protein sequence
MKAALASSNRRTLLSWLNGFGALKARGALWRRLIATKYRSTHYDLKPDTKSLNSSKGPWKSIDGLKILVYSNVSIKVGDGKNTSFWKDEWSGNMSLQLLNPRLHHLSTKK
DAPIADFWCSQSKSWVCYSRRNLTDSQAEDWISLVSNLQTVIINDRSDIWWWELERDKSFSSKSLSNLLSSSSPSAYSELYQHIWVGRYPKKVKFFLWEVSHSCINTHDK
LQKRYLGTMLSPSCCPLCYSYSDEESLIHLFSSCSYASKFWSFLQATFDWVFPRPSHILSLLSLTLLGHPFKNDKKILCVMFGLSSGTYGWSVMVAFSRTRLKTLDSS