CuGenDBv2

Gene ID	Lag0011796
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr1:33071753..33073426
RNA-Seq Expression	Lag0011796
Synteny	Lag0011796
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW17147.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.3e-54

41.29

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+ L+  YEKPSANNKV+L+KK FN++M E+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNEPSSSRKS
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+      N+       
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNEPSSSRKS

Query:  GKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV
               AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ +
Subjt:  GKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV

Query:  AVGHRKPTLY
        A G +  TLY
Subjt:  AVGHRKPTLY

RVW17810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.1e-53

39.82

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+           K +E
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE

Query:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN
        D+  ++  +  +  +              S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Subjt:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN

Query:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        L D+G++  F     K+T G++ +A G +  TLY
Subjt:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

RVW60263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

9.9e-55

42.44

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKI-DEDNEPSSSRK
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG++++ D       S  
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKI-DEDNEPSSSRK

Query:  SGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE
           +  S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ 
Subjt:  SGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE

Query:  VAVGHRKPTLY
        +A G +  TLY
Subjt:  VAVGHRKPTLY

RVW73393.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.1e-53

39.82

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+           K +E
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE

Query:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN
        D+  ++  +  +  +              S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Subjt:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN

Query:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        L D+G++  F     K+T G++ +A G +  TLY
Subjt:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

RVX09487.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.1e-53

39.94

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNE-PSSSRK
        E  T+ NQL SV+I F DE++A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+      N+  S+SR 
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNE-PSSSRK

Query:  SGK---------------------------IGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI
        S +                           +  S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLI
Subjt:  SGK---------------------------IGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI

Query:  SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        S+G L D+G++  F     K+T G++ +A G +  TLY
Subjt:  SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

TrEMBL top hits

e value

%identity

Alignment

A0A438C1P0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-54

41.29

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+ L+  YEKPSANNKV+L+KK FN++M E+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNEPSSSRKS
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+      N+       
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNEPSSSRKS

Query:  GKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV
               AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ +
Subjt:  GKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV

Query:  AVGHRKPTLY
        A G +  TLY
Subjt:  AVGHRKPTLY

A0A438C3I2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-53

39.82

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+           K +E
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE

Query:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN
        D+  ++  +  +  +              S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Subjt:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN

Query:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        L D+G++  F     K+T G++ +A G +  TLY
Subjt:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

A0A438FJS0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.8e-55

42.44

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKI-DEDNEPSSSRK
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG++++ D       S  
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKI-DEDNEPSSSRK

Query:  SGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE
           +  S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ 
Subjt:  SGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE

Query:  VAVGHRKPTLY
        +A G +  TLY
Subjt:  VAVGHRKPTLY

A0A438GME7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-53

39.82

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE
        E  T+ NQL SV+I F DE+ A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+           K +E
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGK----------DKIDE

Query:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN
        D+  ++  +  +  +              S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Subjt:  DNEPSSSRKSGKIGM--------------SAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN

Query:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        L D+G++  F     K+T G++ +A G +  TLY
Subjt:  LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

A0A438JKL2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-53

39.94

Show/hide

Query:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN
        MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++N
Subjt:  MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYIN

Query:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNE-PSSSRK
        E  T+ NQL SV+I F DE++A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL + TRG+      N+  S+SR 
Subjt:  EVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM-TRGKDKIDEDNE-PSSSRK

Query:  SGK---------------------------IGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI
        S +                           +  S AS H   +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLI
Subjt:  SGK---------------------------IGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI

Query:  SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY
        S+G L D+G++  F     K+T G++ +A G +  TLY
Subjt:  SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.3e-32

28.97

Show/hide

Query:  QVKDYLTCRKLHKAL---KEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYI
        +++D L  + LHK L    +KP  M  +DW  LDE A ++IR+ LS DV + +  E  A  +   L + Y   +  NK+YL K+ + + M+E  +  S++
Subjt:  QVKDYLTCRKLHKAL---KEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYI

Query:  NEVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSN-----------------------------
        N    LI QL ++ +   +E  AI LL SLP S++ + T + +  G  T++  +V   L + E++R++  N                             
Subjt:  NEVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSN-----------------------------

Query:  -------------------------------KESTVG-----SALAMTRGKDKI------DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHG
                                       K  T G     +  AM +  D +      +E+    S  +S  +  +AAS H    R LF  +  G  G
Subjt:  -------------------------------KESTVG-----SALAMTRGKDKI------DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHG

Query:  LVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLYKCKLDVAK
         V+MGN   SK +GIGD+ +KT  G  LVL+DVR VP+++MNLIS   L  DGY   F +++ +LT GS  +A G  + TLY+   ++ +
Subjt:  LVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLYKCKLDVAK

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

6.5e-04

Show/hide

Query:  ASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFG
        A I++  Y   FT+        V   +G      G GDV ++ + G K  +R+V FVP +  N++S G +    YS   G
Subjt:  ASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFG

AT3G29785.1 unknown protein

1.9e-08

40.26

Show/hide

Query:  MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKV
        M+++DYL  +KLH+ L +K + M+ DDW  L  + +  IR+ +S ++A  VA E     LM+ L++ Y+KPS NN V
Subjt:  MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGC
AAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGA
ATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCT
GTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATAC
TTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAG
ATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTC
ACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCG
AGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCG
GATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGT
TGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGA
ATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTA
TTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA

mRNA sequence

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Protein sequence

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MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKS
VKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAMTRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSF
TGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLYKCKLDVAKRSRRQWMSVKAADG
CCRGTVEPAARIANFDQSDHDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRVEASKWKAKAIGQVSSLATGILSLGVLPRRSEITVVVGIDPWSLPR

Lag0011796 (gene) of Sponge gourd (AG-4) v1 genome