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Lag0011840 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011840
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr1:33595025..33602721
RNA-Seq ExpressionLag0011840
SyntenyLag0011840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RDX70783.1 hypothetical protein CR513_49937, partial [Mucuna pruriens]1.0e-0535.4Show/hide
Query:  SITSACHQRNHLHHPSARGR-ISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIFQARKVN
        SI    HQ+ ++ +P+ +G  + +       LCA  P+  +SE+ L+ +F E L+  +R M+D ASGG  +DKTP  AR++IS++A        Q+R VN
Subjt:  SITSACHQRNHLHHPSARGR-ISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIFQARKVN

Query:  SSNSSYVQTLEQQ
           ++  Q LE Q
Subjt:  SSNSSYVQTLEQQ

RDY00574.1 hypothetical protein CR513_16235, partial [Mucuna pruriens]1.8e-0539.39Show/hide
Query:  RGRISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ
        R  I + L     LCA  PH  +SE+ L+ +F E L+  DR M+D ASGG  +DKTP+ AR +IS++A+           Q R VN   ++  Q LE Q
Subjt:  RGRISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ

XP_012480890.1 PREDICTED: uncharacterized protein LOC105795779 [Gossypium raimondii]1.8e-0549.12Show/hide
Query:  QWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLA
        +WLCA  P   +SE+ L+ +F E L P DR M+D+ASGG  +DKTP +AR +I+++A
Subjt:  QWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLA

XP_022880996.1 uncharacterized protein LOC111398309 [Olea europaea var. sylvestris]3.9e-0543.02Show/hide
Query:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLAT----YVGLIIFQARKVNSSNSSYVQTLEQQ
        LCA  PH  +SE+ L+ +F E L P DR M+D+ASGG  +DKTP  A+ +I+++AT    +   +   +R VN  N   V +LEQQ
Subjt:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLAT----YVGLIIFQARKVNSSNSSYVQTLEQQ

XP_031112031.1 uncharacterized protein LOC116016002 [Ipomoea triloba]3.9e-0538.37Show/hide
Query:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLAT----YVGLIIFQARKVNSSNSSYVQTLEQQ
        LCA  PH  ++++ L+ +F EEL P DR M+D ASGG  +DKTP+ A+ +I+++AT    +   ++  ++++N  N   +  LEQQ
Subjt:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLAT----YVGLIIFQARKVNSSNSSYVQTLEQQ

TrEMBL top hitse value%identityAlignment
A0A1S3V035 uncharacterized protein LOC1067704107.2e-0549.12Show/hide
Query:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATY
        LC+  P+  +SE+ LL +F E L P +R M+D ASGG  +DKTPS AR +I+++A Y
Subjt:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATY

A0A371EE49 Retrotrans_gag domain-containing protein (Fragment)5.5e-0541.86Show/hide
Query:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ
        LCA  PH  +SE+ L+ +F E L+  DR M+D ASGG  +DKTP+ AR +IS++A+           Q R VN   +++ Q LE Q
Subjt:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ

A0A371EXV9 Uncharacterized protein (Fragment)5.0e-0635.4Show/hide
Query:  SITSACHQRNHLHHPSARGR-ISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIFQARKVN
        SI    HQ+ ++ +P+ +G  + +       LCA  P+  +SE+ L+ +F E L+  +R M+D ASGG  +DKTP  AR++IS++A        Q+R VN
Subjt:  SITSACHQRNHLHHPSARGR-ISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIFQARKVN

Query:  SSNSSYVQTLEQQ
           ++  Q LE Q
Subjt:  SSNSSYVQTLEQQ

A0A371HCZ3 Retrotrans_gag domain-containing protein (Fragment)8.5e-0639.39Show/hide
Query:  RGRISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ
        R  I + L     LCA  PH  +SE+ L+ +F E L+  DR M+D ASGG  +DKTP+ AR +IS++A+           Q R VN   ++  Q LE Q
Subjt:  RGRISQVLGSLQWLCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ

A0A371HFD2 Retrotrans_gag domain-containing protein (Fragment)5.5e-0541.86Show/hide
Query:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ
        LCA  PH  +SE+ L+ +F E L+  DR M+D  SGG  +DKTP+ AR +IS++A+           Q+R VN  N++  Q LE Q
Subjt:  LCA-LPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREIISSLATYVGLIIF----QARKVNSSNSSYVQTLEQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATGAAACGACTGCTCCAAACCACCAAGAACATGGAAGAACTTCGTCTTCTTGAGTGGAATCGCAAATGGCCCGCTTCAATACACTTGGGTCTTTTCACC
TCCTCGCCGTCCAAGAACACTGAGATTGCTCCAAAACTCCATAATTGGCTCGAATTAACACCAATTTACCGTGGTTGGCTCCCAACATCGCCTAAATTCAAAGTA
TCTGACCTCGGGCATACCTACTCATGGGCGTCTACTAGAGTCCCGTCACTACTCTCTTCTTCCACAGTAGCCCAATCAGTTTTGGAGTCAAATCAGCCGGTTATG
TGTGTGGAAAGCTCGTTCAAAACTGACTTGCGACGAACTTCGGACTTGTCTGTTTCTGCCCAGAAATGCGATCAAATTTCATTTTGCCATGGCAGAAATGTAGTC
GCATTTCTGCTGTTAATTGAGCATAGGTCGTGTCGGGAGCCGATCATGCTAATTGGTGTTAATTTGGGCCAATTACGGAGCTTTTGGAATCATTTCGATGTCTTG
GACAGAGAGGAGGTGAAGAGACCCAATTGTGCTGAAACGGGCCTGAATCGTGACACCGAAAGCCAAAGATTGAAGCCCCGAACCGAAAAGAAACAAGACCAAGCC
GAGAAAAGGAGTAGGAAGTCGAGTCAAGAGGCTGGCATCGAGATTTTTTTCTTTGTAGAGCTTAACGATGAATTCAGCATAACCTCGGCGTGTCACCAGAGAAAT
CATTTACATCACCCAAGCGCCCGAGGAAGAATTTCACAAGTATTGGGATCGCTTCAATGGTTATGTGCACTTCCTCATAGCCCATTGTCTGAGGAGTTCTTGTTG
TTGCACTTCATTGAAGAATTAACACCCGACGACAGAAGGATGTTAGATATAGCGAGTGGTGGTGATGCTCTAGACAAAACACCCAGTGAGGCTAGAGAGATAATT
TCGAGCTTGGCGACGTATGTTGGTCTCATCATATTTCAAGCACGAAAGGTAAATTCTTCCAATTCTTCGTATGTCCAAACTCTTGAGCAACAGCAAGAAGGTAAG
TATAATGAGGTTTGTGAGTCTGAGCTTAAGCCTTCTTTATATTTGAGTCTGATTCGTGTGATTCCCATGCGTGAATCTGTTGCTGGGCGACTGGAGGGAGCAAAT
TCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACATCACAGCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATGAAACGACTGCTCCAAACCACCAAGAACATGGAAGAACTTCGTCTTCTTGAGTGGAATCGCAAATGGCCCGCTTCAATACACTTGGGTCTTTTCACC
TCCTCGCCGTCCAAGAACACTGAGATTGCTCCAAAACTCCATAATTGGCTCGAATTAACACCAATTTACCGTGGTTGGCTCCCAACATCGCCTAAATTCAAAGTA
TCTGACCTCGGGCATACCTACTCATGGGCGTCTACTAGAGTCCCGTCACTACTCTCTTCTTCCACAGTAGCCCAATCAGTTTTGGAGTCAAATCAGCCGGTTATG
TGTGTGGAAAGCTCGTTCAAAACTGACTTGCGACGAACTTCGGACTTGTCTGTTTCTGCCCAGAAATGCGATCAAATTTCATTTTGCCATGGCAGAAATGTAGTC
GCATTTCTGCTGTTAATTGAGCATAGGTCGTGTCGGGAGCCGATCATGCTAATTGGTGTTAATTTGGGCCAATTACGGAGCTTTTGGAATCATTTCGATGTCTTG
GACAGAGAGGAGGTGAAGAGACCCAATTGTGCTGAAACGGGCCTGAATCGTGACACCGAAAGCCAAAGATTGAAGCCCCGAACCGAAAAGAAACAAGACCAAGCC
GAGAAAAGGAGTAGGAAGTCGAGTCAAGAGGCTGGCATCGAGATTTTTTTCTTTGTAGAGCTTAACGATGAATTCAGCATAACCTCGGCGTGTCACCAGAGAAAT
CATTTACATCACCCAAGCGCCCGAGGAAGAATTTCACAAGTATTGGGATCGCTTCAATGGTTATGTGCACTTCCTCATAGCCCATTGTCTGAGGAGTTCTTGTTG
TTGCACTTCATTGAAGAATTAACACCCGACGACAGAAGGATGTTAGATATAGCGAGTGGTGGTGATGCTCTAGACAAAACACCCAGTGAGGCTAGAGAGATAATT
TCGAGCTTGGCGACGTATGTTGGTCTCATCATATTTCAAGCACGAAAGGTAAATTCTTCCAATTCTTCGTATGTCCAAACTCTTGAGCAACAGCAAGAAGGTAAG
TATAATGAGGTTTGTGAGTCTGAGCTTAAGCCTTCTTTATATTTGAGTCTGATTCGTGTGATTCCCATGCGTGAATCTGTTGCTGGGCGACTGGAGGGAGCAAAT
TCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACATCACAGCTCTTTAG
Protein sequenceShow/hide protein sequence
MGMKRLLQTTKNMEELRLLEWNRKWPASIHLGLFTSSPSKNTEIAPKLHNWLELTPIYRGWLPTSPKFKVSDLGHTYSWASTRVPSLLSSSTVAQSVLESNQPVM
CVESSFKTDLRRTSDLSVSAQKCDQISFCHGRNVVAFLLLIEHRSCREPIMLIGVNLGQLRSFWNHFDVLDREEVKRPNCAETGLNRDTESQRLKPRTEKKQDQA
EKRSRKSSQEAGIEIFFFVELNDEFSITSACHQRNHLHHPSARGRISQVLGSLQWLCALPHSPLSEEFLLLHFIEELTPDDRRMLDIASGGDALDKTPSEAREII
SSLATYVGLIIFQARKVNSSNSSYVQTLEQQQEGKYNEVCESELKPSLYLSLIRVIPMRESVAGRLEGANSVLQQNWEQNCHITAL