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Lag0011844 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011844
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionsmall RNA degrading nuclease 3-like
Genome locationchr1:33686360..33686731
RNA-Seq ExpressionLag0011844
SyntenyLag0011844
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004527 - exonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595014.1 Small RNA degrading nuclease 3, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

KAG7027042.1 Small RNA degrading nuclease 3, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

XP_022963325.1 small RNA degrading nuclease 1-like isoform X1 [Cucurbita moschata]7.5e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

XP_022963326.1 small RNA degrading nuclease 3-like isoform X2 [Cucurbita moschata]7.5e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

XP_023518728.1 small RNA degrading nuclease 3-like isoform X2 [Cucurbita pepo subsp. pepo]2.2e-2379.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKLVLAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI G FTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

TrEMBL top hitse value%identityAlignment
A0A6J1HFU8 small RNA degrading nuclease 3-like isoform X23.6e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

A0A6J1HHN9 small RNA degrading nuclease 1-like isoform X13.6e-2479.73Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK GQGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

A0A6J1IKA1 small RNA degrading nuclease 3-like5.2e-2354.92Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSLKFLSAIQRKAF------GSKDMSERR
        MKLVLAKLE+K DDVI   + DTPQI MEKLLLHRIP++V SE LAGVI GDFTIE KPPK+GQGGDIYS  ++   S   R+AF       ++D S R 
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSLKFLSAIQRKAF------GSKDMSERR

Query:  LMFVDVIINGGLVKGTMIDLGA
           V    +G +V   +  +GA
Subjt:  LMFVDVIINGGLVKGTMIDLGA

A0A6J1KPW4 small RNA degrading nuclease 3-like isoform X23.1e-2378.38Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK  QGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

A0A6J1KSG2 small RNA degrading nuclease 1-like isoform X13.1e-2378.38Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL
        MKL LAKLE+KVDDVITEA+ +TPQI MEKLLLHRIPV+V SEELAGVI GDFTIE KPPK  QGGDIYS  ++
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSL

SwissProt top hitse value%identityAlignment
A3KPE8 Small RNA degrading nuclease 18.1e-0542.62Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPK
        MKL LA +E +VD  I + + +  ++   KL LH+IP +V SEEL  V+ G FT++ K  K
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPK

Q8RXK2 Small RNA degrading nuclease 31.6e-0542.37Show/hide
Query:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG
        K E++ ++   EA  +  +    KL LH+IP  V S+EL GV+ GDFT++ KPPK+  G
Subjt:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG

Arabidopsis top hitse value%identityAlignment
AT3G50090.1 Exonuclease family protein1.1e-0442.25Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIR-----GDFTIEFKPPKKGQGG
        MKL LA ++ +VD  IT     T +    +L LHRIP H+ SEEL   +       +FTI+ KP K  QGG
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIR-----GDFTIEFKPPKKGQGG

AT3G50100.1 small RNA degrading nuclease 15.8e-0642.62Show/hide
Query:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPK
        MKL LA +E +VD  I + + +  ++   KL LH+IP +V SEEL  V+ G FT++ K  K
Subjt:  MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPK

AT5G67240.1 small RNA degrading nuclease 31.2e-0642.37Show/hide
Query:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG
        K E++ ++   EA  +  +    KL LH+IP  V S+EL GV+ GDFT++ KPPK+  G
Subjt:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG

AT5G67240.2 small RNA degrading nuclease 31.2e-0642.37Show/hide
Query:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG
        K E++ ++   EA  +  +    KL LH+IP  V S+EL GV+ GDFT++ KPPK+  G
Subjt:  KLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTTGTTCTCGCAAAGCTAGAGAACAAAGTTGATGATGTGATTACTGAAGCTAATGGGGATACACCTCAAATTGCTATGGAGAAGTTACTTCTTCATAGA
ATACCAGTTCATGTACAAAGTGAAGAATTAGCTGGAGTTATTCGTGGCGACTTCACAATTGAATTCAAGCCACCTAAGAAAGGTCAAGGGGGAGATATATACTCT
ACAGTTTCCCTAAAGTTCTTATCAGCCATACAGAGAAAAGCCTTCGGGTCGAAAGACATGTCCGAGAGGAGATTGATGTTTGTTGATGTCATCATCAATGGTGGA
CTCGTAAAGGGTACCATGATTGATTTAGGCGCAACCCACAATTTCATTTTCGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACTTGTTCTCGCAAAGCTAGAGAACAAAGTTGATGATGTGATTACTGAAGCTAATGGGGATACACCTCAAATTGCTATGGAGAAGTTACTTCTTCATAGA
ATACCAGTTCATGTACAAAGTGAAGAATTAGCTGGAGTTATTCGTGGCGACTTCACAATTGAATTCAAGCCACCTAAGAAAGGTCAAGGGGGAGATATATACTCT
ACAGTTTCCCTAAAGTTCTTATCAGCCATACAGAGAAAAGCCTTCGGGTCGAAAGACATGTCCGAGAGGAGATTGATGTTTGTTGATGTCATCATCAATGGTGGA
CTCGTAAAGGGTACCATGATTGATTTAGGCGCAACCCACAATTTCATTTTCGAATAA
Protein sequenceShow/hide protein sequence
MKLVLAKLENKVDDVITEANGDTPQIAMEKLLLHRIPVHVQSEELAGVIRGDFTIEFKPPKKGQGGDIYSTVSLKFLSAIQRKAFGSKDMSERRLMFVDVIINGG
LVKGTMIDLGATHNFIFE