; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011872 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011872
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:34105696..34106745
RNA-Seq ExpressionLag0011872
SyntenyLag0011872
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3466751.1 reverse transcriptase [Gossypium australe]2.2e-1027.94Show/hide
Query:  EIRESCSKSLRIRPSWSPLDHWDGLIACLASDEL-NVAAIIMWNIWSFRN-RIREHLESPILAP---PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGS
        +I E  S  + +   ++  D W   +  L S  +  +  + +W IW  RN RI +      +     P    +K+N D ++     L   G  +RDS+GS
Subjt:  EIRESCSKSLRIRPSWSPLDHWDGLIACLASDEL-NVAAIIMWNIWSFRN-RIREHLESPILAP---PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGS

Query:  LIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE
        ++ +  +      S  + EA A +      L      I+   +E DS S+IK       D S++  +I D+  L    K  SFV+ PR AN++AHTLA E
Subjt:  LIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE

Query:  ASMM
           M
Subjt:  ASMM

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]2.2e-1026.32Show/hide
Query:  IWSFRNRIR-EHLESPILA-------PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILG
        +W  R  ++ + ++ P  A       PP   KLK N D +W     +GGVGW +RD  G ++  G KR+    S+   E  AL+  +             
Subjt:  IWSFRNRIR-EHLESPILA-------PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILG

Query:  LDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQV
        +  ESDS+ L++ + N  E   +++  I+ +       +     + PR  N +AH +A+E +M +S  P++
Subjt:  LDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQV

XP_019166936.1 PREDICTED: uncharacterized protein LOC109162706 [Ipomoea nil]5.2e-1231.28Show/hide
Query:  WDGLIACLASDELNVAAIIMWNIWSFRNRIREHLESPIL-----APPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEAC
        W G++     D +   AI  W  W   N + +   +P       + P   +LKLN D + N+S    G+GW  RD  G+ +A    R+   +++   EA 
Subjt:  WDGLIACLASDELNVAAIIMWNIWSFRNRIREHLESPIL-----APPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEAC

Query:  ALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE
        +L+E LS ++KD    +  +DVE DS+++  S+T+   + S   L +ED+ EL  +  +  F +  R AN  AHT+ARE
Subjt:  ALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE

XP_019175595.1 PREDICTED: uncharacterized protein LOC109170919 [Ipomoea nil]1.7e-1030.06Show/hide
Query:  AAIIMWNIWSFRNR----IREHLESPILAPPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNS
        +A+ +W+ W   N       +  E     PP    LKLN DV+ +S+  + G+GW +RD  G+L+A      V ++ +   +A +++E LS ++K     
Subjt:  AAIIMWNIWSFRNR----IREHLESPILAPPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNS

Query:  ILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQ
           +DVE+DS+ +  ++++P  + S   L I+DV E   + ++  F +  R AN  AH LARE   +S    Q
Subjt:  ILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQ

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.7e-1030.92Show/hide
Query:  PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRL
        PP      LN D SW+ S H GG+GW IR   G ++  G + +    ++ +LEA A+ EGL N        +  L +E+DS  +   +    EDL+K   
Subjt:  PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRL

Query:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN
         +E+++ L    +  +F    R  N  AH+LA+ AS++   +  + V+ F N
Subjt:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN

TrEMBL top hitse value%identityAlignment
A0A5B6VCL1 Reverse transcriptase1.1e-1027.94Show/hide
Query:  EIRESCSKSLRIRPSWSPLDHWDGLIACLASDEL-NVAAIIMWNIWSFRN-RIREHLESPILAP---PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGS
        +I E  S  + +   ++  D W   +  L S  +  +  + +W IW  RN RI +      +     P    +K+N D ++     L   G  +RDS+GS
Subjt:  EIRESCSKSLRIRPSWSPLDHWDGLIACLASDEL-NVAAIIMWNIWSFRN-RIREHLESPILAP---PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGS

Query:  LIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE
        ++ +  +      S  + EA A +      L      I+   +E DS S+IK       D S++  +I D+  L    K  SFV+ PR AN++AHTLA E
Subjt:  LIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLARE

Query:  ASMM
           M
Subjt:  ASMM

A0A6J1DNV9 uncharacterized protein LOC1110224038.1e-1130.92Show/hide
Query:  PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRL
        PP      LN D SW+ S H GG+GW IR   G ++  G + +    ++ +LEA A+ EGL N        +  L +E+DS  +   +    EDL+K   
Subjt:  PPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRL

Query:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN
         +E+++ L    +  +F    R  N  AH+LA+ AS++   +  + V+ F N
Subjt:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN

A0A6J5WPU6 Reverse transcriptase domain-containing protein6.9e-1034.09Show/hide
Query:  PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPN-SILGLDVESDSESLIKSITNPCEDLSKIRL
        P P  LK+N D +W++    GGVGW IRDS G L+  G +  +   S +M+E  A++  LS    +C N  +  + VESDS+  I  +       S +  
Subjt:  PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPN-SILGLDVESDSESLIKSITNPCEDLSKIRL

Query:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLA
         + D+ +L       SFV+ PR  N  AH++A
Subjt:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLA

A0A6P5S2T0 uncharacterized protein LOC1107519131.4e-1034.85Show/hide
Query:  PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPN-SILGLDVESDSESLIKSITNPCEDLSKIRL
        P PS LK+N DV+W + L  GGVGW IRDS G L+  G +  ++  S +++E  A++  LS     C +  +  + VESD++  I  +       S +  
Subjt:  PHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPN-SILGLDVESDSESLIKSITNPCEDLSKIRL

Query:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLA
         + D+ +L       SFV+ P+  N VAHT+A
Subjt:  HIEDVIELTKISKNTSFVWCPRFANSVAHTLA

A0A803QFY3 Uncharacterized protein6.9e-1033.53Show/hide
Query:  IREHLESPIL----APPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLI
        + +H  +P L    +PP P  LKLNVD + NSS++  GVG  IRDS G ++A     IV N+    +EA AL   L+  ++     I  + VE D+  + 
Subjt:  IREHLESPIL----APPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLI

Query:  KSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN
         ++T P    S     + DVI L     N       RFAN  AH LA+ A         +GV+  C+
Subjt:  KSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.9e-0823.57Show/hide
Query:  RIREHLESPILAPPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSI
        ++  +L     APP+   +K N D +W       G+GW +R+ +G ++  G + + +  +++  E  AL+  +    +     I+    ESD+++L+ ++
Subjt:  RIREHLESPILAPPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNWSIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSI

Query:  TNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQV
         N  +    ++  +ED+ +L    +   F + PR  N VA  +ARE+   S+  P++
Subjt:  TNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAATAAGGGAGTCATGTTCAAAAAGCTTAAGGATAAGACCCTCCTGGAGTCCGCTCGATCATTGGGATGGGTTGATAGCTTGCCTAGCGAGTGATGAGCTTAA
TGTGGCGGCCATCATTATGTGGAATATTTGGAGTTTTCGGAACAGAATCAGAGAGCATCTCGAGTCACCAATCTTGGCCCCCCCTCATCCCTCTAAGCTCAAGCTGAATG
TGGATGTCTCGTGGAACTCTTCCCTCCATTTGGGCGGGGTTGGTTGGGCGATCCGTGACTCCACAGGATCTCTGATTGCGACTGGTTTCAAGAGAATTGTGAAGAATTGG
TCTATTATGATGTTGGAAGCTTGTGCTCTAAAAGAGGGATTAAGCAATTACCTCAAAGACTGCCCAAATTCCATCCTCGGTCTAGATGTGGAGTCTGATTCGGAATCTCT
CATCAAATCGATCACCAATCCTTGTGAAGATCTCTCGAAAATTCGGCTGCATATTGAAGACGTGATCGAGCTCACTAAGATTTCGAAGAATACCAGCTTTGTTTGGTGCC
CTAGATTTGCCAATTCAGTCGCACACACTTTGGCACGAGAAGCCTCCATGATGTCGTCGGCTCAACCTCAGGTGGGGGTTGAAAGTTTTTGTAATTCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAATAAGGGAGTCATGTTCAAAAAGCTTAAGGATAAGACCCTCCTGGAGTCCGCTCGATCATTGGGATGGGTTGATAGCTTGCCTAGCGAGTGATGAGCTTAA
TGTGGCGGCCATCATTATGTGGAATATTTGGAGTTTTCGGAACAGAATCAGAGAGCATCTCGAGTCACCAATCTTGGCCCCCCCTCATCCCTCTAAGCTCAAGCTGAATG
TGGATGTCTCGTGGAACTCTTCCCTCCATTTGGGCGGGGTTGGTTGGGCGATCCGTGACTCCACAGGATCTCTGATTGCGACTGGTTTCAAGAGAATTGTGAAGAATTGG
TCTATTATGATGTTGGAAGCTTGTGCTCTAAAAGAGGGATTAAGCAATTACCTCAAAGACTGCCCAAATTCCATCCTCGGTCTAGATGTGGAGTCTGATTCGGAATCTCT
CATCAAATCGATCACCAATCCTTGTGAAGATCTCTCGAAAATTCGGCTGCATATTGAAGACGTGATCGAGCTCACTAAGATTTCGAAGAATACCAGCTTTGTTTGGTGCC
CTAGATTTGCCAATTCAGTCGCACACACTTTGGCACGAGAAGCCTCCATGATGTCGTCGGCTCAACCTCAGGTGGGGGTTGAAAGTTTTTGTAATTCGTCTTGA
Protein sequenceShow/hide protein sequence
MAEIRESCSKSLRIRPSWSPLDHWDGLIACLASDELNVAAIIMWNIWSFRNRIREHLESPILAPPHPSKLKLNVDVSWNSSLHLGGVGWAIRDSTGSLIATGFKRIVKNW
SIMMLEACALKEGLSNYLKDCPNSILGLDVESDSESLIKSITNPCEDLSKIRLHIEDVIELTKISKNTSFVWCPRFANSVAHTLAREASMMSSAQPQVGVESFCNSS