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Lag0011888 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011888
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:34531940..34534903
RNA-Seq ExpressionLag0011888
SyntenyLag0011888
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0739979.1 hypothetical protein [Gossypium gossypioides]4.6e-1030Show/hide
Query:  PVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHI
        P Y +++  DAAV  ++  +GYGA +++ADG +       +    + + AE+ AL  GL+L  R+ ++   +  D  T I  I+      + +   +   
Subjt:  PVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHI

Query:  QELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM
         E IR FD I  ++I R SN+ AD L K A+K RC +++  ++P E+ ++
Subjt:  QELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM

PJE76377.1 ribonuclease H [Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_48_16]5.6e-0831.34Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFA-AMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTS-DVYHWILHIQE
        V ++TD   RG       GA IK ADG + A  M ++  TT+N   AE  A++ GL     +   T  ++LD E   K ++G+    + ++    L ++ 
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFA-AMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTS-DVYHWILHIQE

Query:  LIRSFDMISLSYISRQSNKQADFLA-KCALKQRC
        L++ FD ++ +++ R+ NK+AD L  KC   Q C
Subjt:  LIRSFDMISLSYISRQSNKQADFLA-KCALKQRC

XP_015382610.1 uncharacterized protein LOC107175578 [Citrus sinensis]1.6e-0727.27Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI
        V++  DAA   +    G GA I++  GT+ AA   +     +   AE   L  GL++ +        V  D ++ +K++       S+++  I  IQ LI
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI

Query:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL
        R+F+++S++Y  R  N     LAK  L++  +++W+  +P +L
Subjt:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL

XP_024033483.1 uncharacterized protein LOC112095606 [Citrus clementina]7.4e-0827.97Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI
        V++  DAA   +    G GA I++  G + AA   +     +   AE  AL  GL++ +        V  D ++ + ++       S+++  I  IQ L+
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI

Query:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL
        R+FD++S++Y  R  N  A  LAK AL++  +++W+ ++P +L
Subjt:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]5.1e-0930.43Show/hide
Query:  DAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDM
        DAA   ++L  G GA I++++G I AA    ++   +   AE  A++ GL+L +   VS+  +  D    ++++     + S+++  IL IQ  ++ F  
Subjt:  DAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDM

Query:  ISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL
        + +++I R  N  A +LAK AL +    +WL N P EL
Subjt:  ISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQEL

TrEMBL top hitse value%identityAlignment
A0A1F4TPF9 RNase H domain-containing protein6.7e-0731.25Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSD-VYHWILHIQEL
        +++FTD A RG     G G  IK+ +  +     ++   T+N   AE  ALI GL     M ++      D E  ++ ++G+    S+ +     H+Q L
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSD-VYHWILHIQEL

Query:  IRSFDMISLSYISRQSNKQADFLAKCAL
        IR F   S+S+  R++NKQAD LA   +
Subjt:  IRSFDMISLSYISRQSNKQADFLAKCAL

A0A2M8LG11 Ribonuclease H2.7e-0831.34Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFA-AMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTS-DVYHWILHIQE
        V ++TD   RG       GA IK ADG + A  M ++  TT+N   AE  A++ GL     +   T  ++LD E   K ++G+    + ++    L ++ 
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFA-AMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTS-DVYHWILHIQE

Query:  LIRSFDMISLSYISRQSNKQADFLA-KCALKQRC
        L++ FD ++ +++ R+ NK+AD L  KC   Q C
Subjt:  LIRSFDMISLSYISRQSNKQADFLA-KCALKQRC

A0A6P4N2F9 uncharacterized protein LOC1084661551.0e-0727.4Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI
        +++  DAAV  ++  IGYGA  ++ADG++ A     +    +   AE+NALI G++L  R++++   +  D  T I   +      + +   +    + +
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI

Query:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM
        + FD +  ++I R+SN  AD L++ A+K RC +    ++P E+  +
Subjt:  RSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM

A0A7J9BUV8 RNase H domain-containing protein2.2e-1030Show/hide
Query:  PVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHI
        P Y +++  DAAV  ++  +GYGA +++ADG +       +    + + AE+ AL  GL+L  R+ ++   +  D  T I  I+      + +   +   
Subjt:  PVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHI

Query:  QELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM
         E IR FD I  ++I R SN+ AD L K A+K RC +++  ++P E+ ++
Subjt:  QELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM

A0A803QCV6 Uncharacterized protein1.5e-0624.46Show/hide
Query:  PGEVYKKGDRTRIQATPSDLPLAKVEST----------DVPVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLR
        PGE++ K  +  I    +++PL    ST            P     + +DA++      IG GA I+N  G + A        +++   AEV AL  G++
Subjt:  PGEVYKKGDRTRIQATPSDLPLAKVEST----------DVPVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLR

Query:  LLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFP
        L          +  D       ++G     +D    +  I++     + +++ +I RQ NK A  LAK A+  +C+ LW+ ++P
Subjt:  LLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.0e-0426.02Show/hide
Query:  GAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDMISLSYISRQSNKQ
        G  +++++G+   A   +     N L +E+ ALI  ++          C   D +    +I G       V++WI  I   +R F+ I  ++I R  N  
Subjt:  GAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDMISLSYISRQSNKQ

Query:  ADFLAKCALKQRCSML---WLDN
        AD LAK  L+ +   L   W+ N
Subjt:  ADFLAKCALKQRCSML---WLDN

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.7e-0729.92Show/hide
Query:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI
        V +FTDAA + ++  +G+G  I+N                  PL AE  AL   L+  Q + ++   +  D +  I  I  + P+T + Y  I  I  L 
Subjt:  VQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFMDMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELI

Query:  RSFDMISLSYISRQSNKQADFLAKCAL
          F  +S S++ R  N+ AD LAK +L
Subjt:  RSFDMISLSYISRQSNKQADFLAKCAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCGCCTGATGAACGGCGGTTACTGCCGGCAGTAACAGCAATTTTGGACCACCCCGATACACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGAAAGA
TGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGCCGAGGCCGAGCATATGG
TCGGCCTCGGCCCGCTCGTGCGGGCCGAGTCCGTTTGGTCCCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAAACCCT
AAAAAGGCTAGGAGGATGAACATGTATTTATATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTAAATTCTACTATTGACTCTCTACTTTCTGCTCTTGC
TCTTACTTTTCCACGCCCCTCCGTTCTGCTTTCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGTAGGTTTACTGTCTTGCAGGCCACGTCTTCCC
CCATCAACTACAAATTTACCGTTGGTGGCACGGCTGACGAGGACAATTGGGCAGAGGTGGGAGTAGAAAGCCGACCCAGAGGAAGACCGGACCAAAGGGTCGGACCAATT
TGGCCCGACCCATATGGTTGGCCTCGGCATAAGGCCAAGGCCGACCATTCGGCCCGCGGGCGTGGGTTGAGTTTGGCCACCTCCCTTCGATCCCTGATGTCCTCGACCGC
CCCGGTTTCACCTGGAGAAGTCTATAAAAAGGGAGACCGCACACGCATTCAGGCCACGCCTTCTGACTTGCCATTGGCCAAGGTGGAGAGCACTGATGTACCTGTTTACG
GAGTTCAGTTATTTACGGATGCAGCAGTTCGTGGTCAGTCGCTAGGTATTGGATACGGAGCTTTTATTAAAAATGCTGATGGTACCATTTTCGCTGCAATGACATTTATG
GACATGACGACCCACAATCCATTAGCGGCTGAGGTAAATGCTCTAATTCATGGTCTGCGATTATTGCAACGCATGCAAGTTTCGACTGCATGTGTTTATTTGGATTTTGA
GACGACAATCAAGATGATTCGGGGTGACATTCCAACTACCTCTGATGTGTATCATTGGATCCTGCATATCCAAGAGTTGATTCGTTCTTTTGACATGATTAGTTTATCTT
ATATTTCTAGGCAAAGTAACAAGCAAGCTGACTTTCTAGCTAAATGTGCTTTAAAACAGCGATGCTCGATGCTTTGGTTAGATAACTTTCCACAGGAACTTAGGTCAATG
AGCAACAACCATTCTCATTGCAAATGTACTGTTTCGTGTAATTGTTTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCGCCTGATGAACGGCGGTTACTGCCGGCAGTAACAGCAATTTTGGACCACCCCGATACACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGAAAGA
TGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGCCGAGGCCGAGCATATGG
TCGGCCTCGGCCCGCTCGTGCGGGCCGAGTCCGTTTGGTCCCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCGCCTGGTTTGACCTAAAACGCCTCCGAAACCCT
AAAAAGGCTAGGAGGATGAACATGTATTTATATCCCTCTTCGCCACTGAAGAGGGGATCCCGAATTCTATCCCTAAATTCTACTATTGACTCTCTACTTTCTGCTCTTGC
TCTTACTTTTCCACGCCCCTCCGTTCTGCTTTCTGACTTAAGCATCGGAGCCGGTGTGGCGAGCACCACACCGGTGTGTAGGTTTACTGTCTTGCAGGCCACGTCTTCCC
CCATCAACTACAAATTTACCGTTGGTGGCACGGCTGACGAGGACAATTGGGCAGAGGTGGGAGTAGAAAGCCGACCCAGAGGAAGACCGGACCAAAGGGTCGGACCAATT
TGGCCCGACCCATATGGTTGGCCTCGGCATAAGGCCAAGGCCGACCATTCGGCCCGCGGGCGTGGGTTGAGTTTGGCCACCTCCCTTCGATCCCTGATGTCCTCGACCGC
CCCGGTTTCACCTGGAGAAGTCTATAAAAAGGGAGACCGCACACGCATTCAGGCCACGCCTTCTGACTTGCCATTGGCCAAGGTGGAGAGCACTGATGTACCTGTTTACG
GAGTTCAGTTATTTACGGATGCAGCAGTTCGTGGTCAGTCGCTAGGTATTGGATACGGAGCTTTTATTAAAAATGCTGATGGTACCATTTTCGCTGCAATGACATTTATG
GACATGACGACCCACAATCCATTAGCGGCTGAGGTAAATGCTCTAATTCATGGTCTGCGATTATTGCAACGCATGCAAGTTTCGACTGCATGTGTTTATTTGGATTTTGA
GACGACAATCAAGATGATTCGGGGTGACATTCCAACTACCTCTGATGTGTATCATTGGATCCTGCATATCCAAGAGTTGATTCGTTCTTTTGACATGATTAGTTTATCTT
ATATTTCTAGGCAAAGTAACAAGCAAGCTGACTTTCTAGCTAAATGTGCTTTAAAACAGCGATGCTCGATGCTTTGGTTAGATAACTTTCCACAGGAACTTAGGTCAATG
AGCAACAACCATTCTCATTGCAAATGTACTGTTTCGTGTAATTGTTTGAATTAA
Protein sequenceShow/hide protein sequence
MLSPDERRLLPAVTAILDHPDTQGADEDNRGEIGLKDGPRRQNRQMGRAKTEGVGFSARPPARPRPMAEAEHMVGLGPLVRAESVWSRLVPTASGCPGFAWFDLKRLRNP
KKARRMNMYLYPSSPLKRGSRILSLNSTIDSLLSALALTFPRPSVLLSDLSIGAGVASTTPVCRFTVLQATSSPINYKFTVGGTADEDNWAEVGVESRPRGRPDQRVGPI
WPDPYGWPRHKAKADHSARGRGLSLATSLRSLMSSTAPVSPGEVYKKGDRTRIQATPSDLPLAKVESTDVPVYGVQLFTDAAVRGQSLGIGYGAFIKNADGTIFAAMTFM
DMTTHNPLAAEVNALIHGLRLLQRMQVSTACVYLDFETTIKMIRGDIPTTSDVYHWILHIQELIRSFDMISLSYISRQSNKQADFLAKCALKQRCSMLWLDNFPQELRSM
SNNHSHCKCTVSCNCLN