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Lag0011897 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011897
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr1:34633696..34634266
RNA-Seq ExpressionLag0011897
SyntenyLag0011897
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN70053.1 transposable element gene [Prunus dulcis]1.2e-2947.17Show/hide
Query:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS--IFNMKVGWKSKLFS
        +LS A R   + GI I R +P VSHLFFADDS +F K      G+ K I   YERAS Q IN  KS V FS N+ +DT+S L+S  ++    GW+ +  S
Subjt:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS--IFNMKVGWKSKLFS

Query:  GDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
          GKE+L+K V Q IP Y M  F LP+GL   I  + A+FWWG     R IHW +WE L
Subjt:  GDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

XP_010690177.1 PREDICTED: uncharacterized protein LOC104903764 [Beta vulgaris subsp. vulgaris]1.4e-3043.01Show/hide
Query:  ARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENV-------LVDT---------KSYL-------
        AR+R I G+ + R +P VSHLFFADDS++F K    E      I+  YERAS Q +NL+K+ V FS NV       +V+T         + YL       
Subjt:  ARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENV-------LVDT---------KSYL-------

Query:  -----------SSIFNMKVGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
                     I+    GWK KL S  GKEI+IK+V Q IPTY M  F++P GL+  I SL A+FWWGS+ + R +HW KWEDL
Subjt:  -----------SSIFNMKVGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

XP_021760236.1 uncharacterized protein LOC110725072 [Chenopodium quinoa]8.6e-3346.45Show/hide
Query:  LSTARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKVGWKSKLFSGDGK
        LS A   DI G+  +R  PE+SHL FADDS++F +    E      IL  YE AS Q IN  KS V FS  V  + K+ +  I NMK GWK K+ S  GK
Subjt:  LSTARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKVGWKSKLFSGDGK

Query:  EILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
        EIL+KS++Q IPTY MG ++ P  ++ +I S  A FWWG SE+ + IHW+ W+ +
Subjt:  EILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

XP_021761446.1 uncharacterized protein LOC110726302 [Chenopodium quinoa]8.9e-3038.74Show/hide
Query:  MLSTARDRD-ISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKV----------
        ML TA  R+ I G+  +R+ PE++HLFFADD+++F +    E  +   IL  YE  S+Q INL KS V FS+ V + ++  LSSI  M++          
Subjt:  MLSTARDRD-ISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKV----------

Query:  ------------------------GWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
                                GWK K  S  GKE+L+KS++Q IPTY MG +R P+GL+  I ++ A+FWWGS++  R IHW+ W+ L
Subjt:  ------------------------GWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

XP_028082512.1 uncharacterized protein LOC114283840 [Camellia sinensis]8.9e-3040.76Show/hide
Query:  DRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS-----------------------
        +R  +G+++ R  P VSHLFFADDS+IF      E  + K IL  YE AS Q INL KS +CFS+NV VDT+  L +                       
Subjt:  DRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS-----------------------

Query:  -----------IFNMKVGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
                   ++    GWK K  S  G+E+LIKSV Q IPTY M  F+LP GL   I S+ + +WWG  EN R IHW+ W  L
Subjt:  -----------IFNMKVGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

TrEMBL top hitse value%identityAlignment
A0A2N9GET2 Reverse transcriptase domain-containing protein4.3e-3045.27Show/hide
Query:  DISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKVGWKSKLFSGDGKEILIKSV
        D+ G+SI+RS P+++HLFFADDS++F K    +    + IL DYE AS Q IN  K+ + FS++   + ++++        GWK KL S  G+E+LIKSV
Subjt:  DISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKVGWKSKLFSGDGKEILIKSV

Query:  VQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
         Q IPTYAM  FRLPK L+  +  L  KFWWG   N   +HW  W+ L
Subjt:  VQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

A0A2N9J2A6 Reverse transcriptase domain-containing protein2.5e-3041.9Show/hide
Query:  RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKV----------------
        RD  I GISI R  P +SHLFFADDS+IF K   +E G  + IL  YERAS Q IN  K+++ FS N  +DT++ ++++F   V                
Subjt:  RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKV----------------

Query:  ------------------GWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHW
                          GWK KL S  G+E+LIK+V+Q IPTYAM  F+LP G    ISS+   FWWG  +  R IHW
Subjt:  ------------------GWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHW

A0A5H2XQ94 Transposable element protein5.6e-3047.17Show/hide
Query:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS--IFNMKVGWKSKLFS
        +LS A R   + GI I R +P VSHLFFADDS +F K      G+ K I   YERAS Q IN  KS V FS N+ +DT+S L+S  ++    GW+ +  S
Subjt:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSS--IFNMKVGWKSKLFS

Query:  GDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
          GKE+L+K V Q IP Y M  F LP+GL   I  + A+FWWG     R IHW +WE L
Subjt:  GDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

A0A5H2XYM3 Transposable element protein (Fragment)1.6e-2945.45Show/hide
Query:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMK--------VGW
        +LS A R   + GI I R +P VSHLFFADDS +F K      G+ K I   YERAS Q IN  KS V FS N+ +DT+S L+S+  +          GW
Subjt:  MLSTA-RDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMK--------VGW

Query:  KSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
        + +  S  GKE+L+K V Q IP Y M  F LP+GL   I  + A+FWWG     R IHW +WE L
Subjt:  KSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

F4NCI7 Reverse transcriptase domain-containing protein9.6e-3040.86Show/hide
Query:  ARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMK----------------
        A ++ I G  I R +P VSHLFFADDS++F K    E  M   I+  YERAS Q +NL+K+ V FS +V  + +S + ++  +K                
Subjt:  ARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMK----------------

Query:  ------------------VGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
                           GWK KL S  GKE+LIKSV Q IPTY M  F LP GL+  I SL A+FWWGSS+  R +HW  W+ L
Subjt:  ------------------VGWKSKLFSGDGKEILIKSVVQVIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0640Show/hide
Query:  IPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL
        +PTY M  F LPK +  +I S+ A FWW + +  + +HW+ W+ L
Subjt:  IPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCAACTGCTAGAGATCGGGATATTTCTGGAATTTCAATTGCTAGATCATCTCCTGAAGTTTCTCATTTGTTCTTCGCTGATGATAGTATGATTTTCCTTAAGAC
TTTAGCTGCAGAATTTGGGATGTTTAAATCAATTTTGTTTGATTATGAAAGAGCATCAAAACAATGCATTAATCTTAACAAGTCGATGGTCTGCTTTTCAGAAAATGTCC
TAGTAGACACTAAGAGTTATCTCAGCTCTATTTTTAACATGAAGGTTGGATGGAAGAGTAAATTGTTTTCCGGTGATGGGAAAGAGATCCTTATTAAGAGTGTTGTGCAA
GTCATCCCAACTTATGCTATGGGTTGGTTTCGACTCCCCAAAGGCCTGTTGTCCAGAATATCATCCTTGTGTGCAAAATTCTGGTGGGGTTCCTCGGAGAATACTCGACA
CATTCATTGGAGGAAATGGGAGGATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCAACTGCTAGAGATCGGGATATTTCTGGAATTTCAATTGCTAGATCATCTCCTGAAGTTTCTCATTTGTTCTTCGCTGATGATAGTATGATTTTCCTTAAGAC
TTTAGCTGCAGAATTTGGGATGTTTAAATCAATTTTGTTTGATTATGAAAGAGCATCAAAACAATGCATTAATCTTAACAAGTCGATGGTCTGCTTTTCAGAAAATGTCC
TAGTAGACACTAAGAGTTATCTCAGCTCTATTTTTAACATGAAGGTTGGATGGAAGAGTAAATTGTTTTCCGGTGATGGGAAAGAGATCCTTATTAAGAGTGTTGTGCAA
GTCATCCCAACTTATGCTATGGGTTGGTTTCGACTCCCCAAAGGCCTGTTGTCCAGAATATCATCCTTGTGTGCAAAATTCTGGTGGGGTTCCTCGGAGAATACTCGACA
CATTCATTGGAGGAAATGGGAGGATTTGTGA
Protein sequenceShow/hide protein sequence
MLSTARDRDISGISIARSSPEVSHLFFADDSMIFLKTLAAEFGMFKSILFDYERASKQCINLNKSMVCFSENVLVDTKSYLSSIFNMKVGWKSKLFSGDGKEILIKSVVQ
VIPTYAMGWFRLPKGLLSRISSLCAKFWWGSSENTRHIHWRKWEDL