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Lag0011907 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011907
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr1:34805617..34809256
RNA-Seq ExpressionLag0011907
SyntenyLag0011907
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142327.1 uncharacterized protein LOC111012468 [Momordica charantia]4.3e-1360Show/hide
Query:  SSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        SSS+T  +A +S+++ Y N YYLHHSD T+LVLVS  L E+NY SWS +MII L+VKNK+GFVDG + +P
Subjt:  SSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

XP_022154608.1 uncharacterized protein LOC111021831 [Momordica charantia]1.1e-1357.14Show/hide
Query:  DSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQPL
        DSS P SSSS       S VD  +N YYLHH+D T LVLV++PLTE NY+SWS +M+I LS+KNK+GF+DG + +P+
Subjt:  DSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQPL

XP_031736904.1 uncharacterized protein LOC105434586 isoform X1 [Cucumis sativus]3.6e-1268.52Show/hide
Query:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        Y+N Y+LHH+D TNLVLV++ LTE NY SWS AM IGLSVKNK+GFVDG + +P
Subjt:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

XP_031736905.1 uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus]3.6e-1268.52Show/hide
Query:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        Y+N Y+LHH+D TNLVLV++ LTE NY SWS AM IGLSVKNK+GFVDG + +P
Subjt:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

XP_031736906.1 uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus]3.6e-1268.52Show/hide
Query:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        Y+N Y+LHH+D TNLVLV++ LTE NY SWS AM IGLSVKNK+GFVDG + +P
Subjt:  YINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

TrEMBL top hitse value%identityAlignment
A0A0A0LI19 Retrotran_gag_3 domain-containing protein4.3e-1155.56Show/hide
Query:  PVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        P SSSS  Q  N S ++ Y N Y+LHHS+ T++VLVS  LTE+NYASWS AM I L  KNK+GF D  + +P
Subjt:  PVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

A0A6J1CMF8 uncharacterized protein LOC1110124682.1e-1360Show/hide
Query:  SSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        SSS+T  +A +S+++ Y N YYLHHSD T+LVLVS  L E+NY SWS +MII L+VKNK+GFVDG + +P
Subjt:  SSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

A0A6J1DIP8 uncharacterized protein LOC1110203996.6e-1253.62Show/hide
Query:  SSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        ++ST  +     ++ Y N Y+LHHSD T+LVLVS PLT  NY SWS +M+I L+VKNK+GFVDG +++P
Subjt:  SSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

A0A6J1DKR8 uncharacterized protein LOC1110218315.4e-1457.14Show/hide
Query:  DSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQPL
        DSS P SSSS       S VD  +N YYLHH+D T LVLV++PLTE NY+SWS +M+I LS+KNK+GF+DG + +P+
Subjt:  DSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQPL

A0A7J0FKC9 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein1.3e-1047.78Show/hide
Query:  SLLSGFWHQQGQSLDSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP
        ++  G   Q G+  +S    +S S+I   N    D   + Y+LHHSDG  LVLVS+ LT  NYASW+ AMII LSVKNK+GF+DG + +P
Subjt:  SLLSGFWHQQGQSLDSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGACCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTTTTCGGTCCCTGATGCCCCGAATCG
CCCCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGGCAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGT
TTTTGCTAGTCTTGCAGGTCACGTCTTCTCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGTCTTCTGTCCGGATTTTGGCATCAACAAGGTCAA
TCCCTCGATTCCTCTATCCCAGTGTCTTCTTCCTCCACAATTCAGCTCGCCAATTCATCCGTTGTAGATTTGTACATCAACCTCTACTACCTTCACCATTCTGATGGCAC
CAATTTGGTCTTGGTTTCAAAGCCTCTCACGGAGTCAAATTACGCTTCTTGGAGCCCAGCCATGATCATTGGCCTCAGTGTGAAGAACAAAATGGGTTTTGTTGATGGTT
ATCTACTACAACCCCTGGTGCCCTTCGTCAATCTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGACCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTTTTCGGTCCCTGATGCCCCGAATCG
CCCCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGGCAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGT
TTTTGCTAGTCTTGCAGGTCACGTCTTCTCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGTCTTCTGTCCGGATTTTGGCATCAACAAGGTCAA
TCCCTCGATTCCTCTATCCCAGTGTCTTCTTCCTCCACAATTCAGCTCGCCAATTCATCCGTTGTAGATTTGTACATCAACCTCTACTACCTTCACCATTCTGATGGCAC
CAATTTGGTCTTGGTTTCAAAGCCTCTCACGGAGTCAAATTACGCTTCTTGGAGCCCAGCCATGATCATTGGCCTCAGTGTGAAGAACAAAATGGGTTTTGTTGATGGTT
ATCTACTACAACCCCTGGTGCCCTTCGTCAATCTTGGATAA
Protein sequenceShow/hide protein sequence
MARPIWSASAKGRGRPFDPFARAEPGDLFSVPDAPNRPGFAWFVPKHHRIPKNPRRANRHRRRCGLHHAGVQRFLLVLQVTSSPVSTNSLLVSREGQVSLLSGFWHQQGQ
SLDSSIPVSSSSTIQLANSSVVDLYINLYYLHHSDGTNLVLVSKPLTESNYASWSPAMIIGLSVKNKMGFVDGYLLQPLVPFVNLG