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Lag0011945 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011945
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr1:35231806..35236045
RNA-Seq ExpressionLag0011945
SyntenyLag0011945
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]3.6e-1736.6Show/hide
Query:  VLAKNRLRPTAAHPYSPPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        V+ KN L  +      P +W +    NL DSE  K   L  +LDHIHLS +  D   W L+ +G F+ KS  + ++  S L      K +W    P K+ 
Subjt:  VLAKNRLRPTAAHPYSPPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        FF+W +AHK +NT D+LQ R PY  L P  C LC    E+  H    C +  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

CAN78865.1 hypothetical protein VITISV_013346 [Vitis vinifera]1.5e-1534.94Show/hide
Query:  RPLETEWS-----VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLA
        +PLET++      V+ KN    +   P  P +W    + NL DS+      L  +LD ++LS +  D+  WPL+ +G FS KS  + ++ +S       +
Subjt:  RPLETEWS-----VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLA

Query:  KAIWKENYPKKVIFFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        K +W    P KV  F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  KAIWKENYPKKVIFFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

RVW15141.1 putative ribonuclease H protein [Vitis vinifera]1.8e-1637.96Show/hide
Query:  PPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVIFFLWELAHKAINTKDI
        P +W +    NL DSE  +   L  +LDHIHLS +  D   W L+ +G F+ KS  + ++  SSL      K +W    P K+  F+W +AHK +NT D+
Subjt:  PPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVIFFLWELAHKAINTKDI

Query:  LQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        LQ R PY  L P  C LC    E++ H    C L  G
Subjt:  LQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

RVX18209.1 putative ribonuclease H protein [Vitis vinifera]5.2e-1637.25Show/hide
Query:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        VL KN    +   P  P +W    + NL DSE      L  +LD +HLS +  D+  WPL+ +G FS KS  + ++  S       +K +W    P KV 
Subjt:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
         F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

RVX20328.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]6.8e-1637.25Show/hide
Query:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        VL KN    +   P  P +W    + NL DSE      L  +LD +HLS +  D+  WPL+ +G FS KS  + ++  S       +K +W    P KV 
Subjt:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
         F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

TrEMBL top hitse value%identityAlignment
A0A438BVX7 Putative ribonuclease H protein8.6e-1737.96Show/hide
Query:  PPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVIFFLWELAHKAINTKDI
        P +W +    NL DSE  +   L  +LDHIHLS +  D   W L+ +G F+ KS  + ++  SSL      K +W    P K+  F+W +AHK +NT D+
Subjt:  PPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVIFFLWELAHKAINTKDI

Query:  LQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        LQ R PY  L P  C LC    E++ H    C L  G
Subjt:  LQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

A0A438KAF5 Putative ribonuclease H protein2.5e-1637.25Show/hide
Query:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        VL KN    +   P  P +W    + NL DSE      L  +LD +HLS +  D+  WPL+ +G FS KS  + ++  S       +K +W    P KV 
Subjt:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
         F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

A0A438KGJ2 Transposon TX1 uncharacterized 149 kDa protein3.3e-1637.25Show/hide
Query:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        VL KN    +   P  P +W    + NL DSE      L  +LD +HLS +  D+  WPL+ +G FS KS  + ++  S       +K +W    P KV 
Subjt:  VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
         F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

A5BCE8 Reverse transcriptase domain-containing protein7.3e-1634.94Show/hide
Query:  RPLETEWS-----VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLA
        +PLET++      V+ KN    +   P  P +W    + NL DS+      L  +LD ++LS +  D+  WPL+ +G FS KS  + ++ +S       +
Subjt:  RPLETEWS-----VLAKNRLRPTAAHPYSPPAW----KWNLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLA

Query:  KAIWKENYPKKVIFFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        K +W    P KV  F+W +AHK +NT D+LQ R PY  L P  C LC    ES  H    C L  G
Subjt:  KAIWKENYPKKVIFFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

A5BPI6 Uncharacterized protein1.7e-1736.6Show/hide
Query:  VLAKNRLRPTAAHPYSPPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI
        V+ KN L  +      P +W +    NL DSE  K   L  +LDHIHLS +  D   W L+ +G F+ KS  + ++  S L      K +W    P K+ 
Subjt:  VLAKNRLRPTAAHPYSPPAWKW----NLKDSETTKWVDLSLNLDHIHLSQTA-DSWKWPLNPNGNFSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVI

Query:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG
        FF+W +AHK +NT D+LQ R PY  L P  C LC    E+  H    C +  G
Subjt:  FFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATAGTCCTCCAAATCTGCAAAGGATGCACCATTGCAACCCCAAGAAGAAGGAAGAGTGCATCAGCATGTGATCTAAGTCGGTCGGTCGGCGTCACCAACTCACC
AAGAACTGACGACCACCGACCGCTTGAAACCGAATGGTCGGTTTTGGCCAAAAACCGACTCCGACCGACCGCTGCTCACCCCTATAGTCCACCAGCTTGGAAATGGAACT
TGAAAGACTCCGAGACTACAAAATGGGTTGATCTTAGTTTGAATCTCGACCACATTCACTTATCCCAAACAGCAGACTCCTGGAAATGGCCCCTCAATCCAAATGGCAAC
TTTTCCACTAAATCCCTCGTCATTGACATGGCTGGAACCTCTAGCCTTATGGATCCATCATTGGCAAAGGCCATATGGAAAGAAAACTATCCCAAGAAAGTCATTTTTTT
CTTATGGGAGCTAGCTCATAAAGCCATCAACACCAAAGACATTTTGCAAAAGCGTATGCCTTATATGCCTCTTTTCCCCGGGAGGTGTTCTTTATGCAAAGCGGATGACG
AATCTCAGATACATACTTCTGCCTTATGCCCTCTTGCAGGAGGCAAGAGGAGGACCTTCATCATTTACTTTGGGATTGTTAGTTTGCTTGCTCGATCTGGAGTCAATTCT
TTAGAGCTTTTGGGGTTGCTTCGGCTCGTAACTTGGATTGTTCCTCTATTTTTTAGGAAGTTCTTTGGTATCCCCTTTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATAGTCCTCCAAATCTGCAAAGGATGCACCATTGCAACCCCAAGAAGAAGGAAGAGTGCATCAGCATGTGATCTAAGTCGGTCGGTCGGCGTCACCAACTCACC
AAGAACTGACGACCACCGACCGCTTGAAACCGAATGGTCGGTTTTGGCCAAAAACCGACTCCGACCGACCGCTGCTCACCCCTATAGTCCACCAGCTTGGAAATGGAACT
TGAAAGACTCCGAGACTACAAAATGGGTTGATCTTAGTTTGAATCTCGACCACATTCACTTATCCCAAACAGCAGACTCCTGGAAATGGCCCCTCAATCCAAATGGCAAC
TTTTCCACTAAATCCCTCGTCATTGACATGGCTGGAACCTCTAGCCTTATGGATCCATCATTGGCAAAGGCCATATGGAAAGAAAACTATCCCAAGAAAGTCATTTTTTT
CTTATGGGAGCTAGCTCATAAAGCCATCAACACCAAAGACATTTTGCAAAAGCGTATGCCTTATATGCCTCTTTTCCCCGGGAGGTGTTCTTTATGCAAAGCGGATGACG
AATCTCAGATACATACTTCTGCCTTATGCCCTCTTGCAGGAGGCAAGAGGAGGACCTTCATCATTTACTTTGGGATTGTTAGTTTGCTTGCTCGATCTGGAGTCAATTCT
TTAGAGCTTTTGGGGTTGCTTCGGCTCGTAACTTGGATTGTTCCTCTATTTTTTAGGAAGTTCTTTGGTATCCCCTTTTCGTGA
Protein sequenceShow/hide protein sequence
MVIVLQICKGCTIATPRRRKSASACDLSRSVGVTNSPRTDDHRPLETEWSVLAKNRLRPTAAHPYSPPAWKWNLKDSETTKWVDLSLNLDHIHLSQTADSWKWPLNPNGN
FSTKSLVIDMAGTSSLMDPSLAKAIWKENYPKKVIFFLWELAHKAINTKDILQKRMPYMPLFPGRCSLCKADDESQIHTSALCPLAGGKRRTFIIYFGIVSLLARSGVNS
LELLGLLRLVTWIVPLFFRKFFGIPFS