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Lag0011952 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011952
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:35370311..35370637
RNA-Seq ExpressionLag0011952
SyntenyLag0011952
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNT66003.1 hypothetical protein BRADI_3g05652v3 [Brachypodium distachyon]2.4e-0533.73Show/hide
Query:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK
        M K+NVD ++T          +IRD+ G  VGAS   + I Y A  AE +A++ G+ LA+  GC  +++ SD  + ++ +  K
Subjt:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK

PON66239.1 Ribonuclease H-like domain containing protein [Parasponia andersonii]2.4e-0533.73Show/hide
Query:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKT
        +K+N DA+        GL  ++RD  G ++ A ++S  ++Y A + EVM + KG+ +AR  G   +IVESD+S  ++L+  ++
Subjt:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.4e-0534.52Show/hide
Query:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTE
        WK+N +AAW +   + G+  I+RD  G ++ AS   ++ +      EVMAI +G+   R   C+ I +ESDS +AI+L+ ++ +
Subjt:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTE

XP_030923260.1 uncharacterized protein LOC115950147 [Quercus lobata]2.4e-0539.51Show/hide
Query:  KVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK
        K+NVD A +    S+ +  +IRDS G +V A +  +++ + A ++E+MA+  GV LA+ L    II+ESDS  AI  V  K
Subjt:  KVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.9e-0737.14Show/hide
Query:  KVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAK------KTEVWGWRPSRINL
        K+NVDAAW  SP S+G   IIRD+ G++      S+   Y  P+AE   + +G+ L   +  K+IIV+SD S AI+L  K         VW      I++
Subjt:  KVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAK------KTEVWGWRPSRINL

Query:  FFFLI
         F+ I
Subjt:  FFFLI

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein1.5e-0536.36Show/hide
Query:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAI
        M K+NVDA++           +IRD+ G  V AS   + I Y A +AE MA++ G+  A+ LGC  +++ SDS + +
Subjt:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAI

A0A2K2CVF0 RNase H domain-containing protein1.1e-0533.73Show/hide
Query:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK
        M K+NVD ++T          +IRD+ G  VGAS   + I Y A  AE +A++ G+ LA+  GC  +++ SD  + ++ +  K
Subjt:  MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKK

A0A2P5CYX0 Ribonuclease H-like domain containing protein1.1e-0533.73Show/hide
Query:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKT
        +K+N DA+        GL  ++RD  G ++ A ++S  ++Y A + EVM + KG+ +AR  G   +IVESD+S  ++L+  ++
Subjt:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKT

A0A6J1CP26 uncharacterized protein LOC1110134121.1e-0534.52Show/hide
Query:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTE
        WK+N +AAW +   + G+  I+RD  G ++ AS   ++ +      EVMAI +G+   R   C+ I +ESDS +AI+L+ ++ +
Subjt:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTE

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.5e-0532.94Show/hide
Query:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTEV
        WK+N DAAW +   + G+  I+RD  G ++      ++ +      EVMAI +G+   R   C+ I +ESDS +AI+L+ +  ++
Subjt:  WKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGGTTAACGTAGATGCAGCTTGGACTTCTTCTCCTCCATCGACAGGGTTGAGGAAAATTATCAGAGATTCCATGGGCAACATAGTTGGAGCTTCAACATTTTC
AGTTAAAATCGACTATAAAGCCCCCATAGCAGAAGTGATGGCAATTTTCAAAGGTGTATCGCTGGCTAGGTTGCTGGGATGTAAGGAAATTATCGTGGAATCTGATTCTT
CTCAGGCGATTAATCTGGTGGCAAAGAAAACTGAAGTTTGGGGTTGGAGGCCATCTAGGATCAACTTGTTTTTTTTTCTCATATGTCAATTTTGTATACATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGGTTAACGTAGATGCAGCTTGGACTTCTTCTCCTCCATCGACAGGGTTGAGGAAAATTATCAGAGATTCCATGGGCAACATAGTTGGAGCTTCAACATTTTC
AGTTAAAATCGACTATAAAGCCCCCATAGCAGAAGTGATGGCAATTTTCAAAGGTGTATCGCTGGCTAGGTTGCTGGGATGTAAGGAAATTATCGTGGAATCTGATTCTT
CTCAGGCGATTAATCTGGTGGCAAAGAAAACTGAAGTTTGGGGTTGGAGGCCATCTAGGATCAACTTGTTTTTTTTTCTCATATGTCAATTTTGTATACATTTCTAG
Protein sequenceShow/hide protein sequence
MWKVNVDAAWTSSPPSTGLRKIIRDSMGNIVGASTFSVKIDYKAPIAEVMAIFKGVSLARLLGCKEIIVESDSSQAINLVAKKTEVWGWRPSRINLFFFLICQFCIHF