; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011973 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011973
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:35819927..35822073
RNA-Seq ExpressionLag0011973
SyntenyLag0011973
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]4.0e-2330.58Show/hide
Query:  LVGQRRSFF------IKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV
        LVG+    F       +  + + GPW F KSL++L++PKG      ++F                  ++    +   +GEV  V++  E    WG  +RV
Subjt:  LVGQRRSFF------IKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV

Query:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGR
        K+QVD++KPLKR + ++ G  +E   + + YE+LPDFC+ CG +GH+++EC  E+  +  + G++  +GSW+R +   K++  S+   S+   +   RGR
Subjt:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGR

Query:  NWDGGR
        + +G R
Subjt:  NWDGGR

TXG57113.1 hypothetical protein EZV62_018426 [Acer yangbiense]4.8e-2134.03Show/hide
Query:  LVGQRRSFFI------KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV
        LVG  R  F       +  + + GPW F  SL++L++P G      + F                  R+ A  +   +GEV ++ L  E    WG  +RV
Subjt:  LVGQRRSFFI------KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV

Query:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVF--LKTRESSVPHGS
        K+++D+ KPLKR + L+ G   E   + + YE+LP+FCY CG +GH IKEC  EE  Q  + G    +GSWL+  V   +K R  S+ +GS
Subjt:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVF--LKTRESSVPHGS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]5.5e-2535.48Show/hide
Query:  RSFFIKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEFR------------------KVAMEIGSLLGEVDQVDLDEEINHNWGGS-LRVKIQVDVSKPL
        +S   K  +  +GPW F+KSLL+L  P   N   DM F                   ++A  +G+ LG+V++++ D      W G  +RV++++DVSKPL
Subjt:  RSFFIKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEFR------------------KVAMEIGSLLGEVDQVDLDEEINHNWGGS-LRVKIQVDVSKPL

Query:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGR-GRGRNWDGGRG----
        +RGI L+  + K D W P+ YEKLPDFCY CG +GH+ +ECE+ ++         YG WLR ++  K+   S P   +    GR GRG   +GGRG    
Subjt:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGR-GRGRNWDGGRG----

Query:  ------RWREVVQEEDS
               WR++   E S
Subjt:  ------RWREVVQEEDS

XP_030940140.1 uncharacterized protein LOC115965077 [Quercus lobata]1.3e-2140.74Show/hide
Query:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I
        KK I +  PW ++KSL++LKE +G     D+                    R+    IG+ LGEV  VD+ E    NWG  LRV++ +DV+K L RG  I
Subjt:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I

Query:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGE--ELPYGSWLRESV
         +E G   E RWI   YE+LP+FCY CG L H +K+C+EEN  G   E   L YG+W+R  V
Subjt:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGE--ELPYGSWLRESV

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]3.7e-2134.55Show/hide
Query:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRGIFL
        K+   D GPW   K  L++ +       D++EF                  ++VA++IG  LGE  +VDL+ +     G  LRVK+++++ KPL+RGI +
Subjt:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRGIFL

Query:  EPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGRNWDGGRGRW
        + G   ++RW PITYE LPDFCY CG +GHT K C  +     AGE+ P+G   RE  ++  ++      S  +   R  G    GG G W
Subjt:  EPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGRNWDGGRGRW

TrEMBL top hitse value%identityAlignment
A0A5C7GU64 CCHC-type domain-containing protein1.9e-2330.58Show/hide
Query:  LVGQRRSFF------IKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV
        LVG+    F       +  + + GPW F KSL++L++PKG      ++F                  ++    +   +GEV  V++  E    WG  +RV
Subjt:  LVGQRRSFF------IKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV

Query:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGR
        K+QVD++KPLKR + ++ G  +E   + + YE+LPDFC+ CG +GH+++EC  E+  +  + G++  +GSW+R +   K++  S+   S+   +   RGR
Subjt:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGR

Query:  NWDGGR
        + +G R
Subjt:  NWDGGR

A0A5C7HJ97 CCHC-type domain-containing protein2.3e-2134.03Show/hide
Query:  LVGQRRSFFI------KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV
        LVG  R  F       +  + + GPW F  SL++L++P G      + F                  R+ A  +   +GEV ++ L  E    WG  +RV
Subjt:  LVGQRRSFFI------KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRV

Query:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVF--LKTRESSVPHGS
        K+++D+ KPLKR + L+ G   E   + + YE+LP+FCY CG +GH IKEC  EE  Q  + G    +GSWL+  V   +K R  S+ +GS
Subjt:  KIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC--EEENQGGIAGEELPYGSWLRESVF--LKTRESSVPHGS

A0A6J1D765 uncharacterized protein LOC1110179022.7e-2535.48Show/hide
Query:  RSFFIKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEFR------------------KVAMEIGSLLGEVDQVDLDEEINHNWGGS-LRVKIQVDVSKPL
        +S   K  +  +GPW F+KSLL+L  P   N   DM F                   ++A  +G+ LG+V++++ D      W G  +RV++++DVSKPL
Subjt:  RSFFIKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEFR------------------KVAMEIGSLLGEVDQVDLDEEINHNWGGS-LRVKIQVDVSKPL

Query:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGR-GRGRNWDGGRG----
        +RGI L+  + K D W P+ YEKLPDFCY CG +GH+ +ECE+ ++         YG WLR ++  K+   S P   +    GR GRG   +GGRG    
Subjt:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGR-GRGRNWDGGRG----

Query:  ------RWREVVQEEDS
               WR++   E S
Subjt:  ------RWREVVQEEDS

A0A7N2MS75 CCHC-type domain-containing protein6.2e-2240.74Show/hide
Query:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I
        KK I +  PW ++KSL++LKE +G     D+                    R+    IG+ LGEV  VD+ E    NWG  LRV++ +DV+K L RG  I
Subjt:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I

Query:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGE--ELPYGSWLRESV
         +E G   E RWI   YE+LP+FCY CG L H +K+C+EEN  G   E   L YG+W+R  V
Subjt:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGE--ELPYGSWLRESV

A0A7N2QWW0 CCHC-type domain-containing protein8.0e-2240.12Show/hide
Query:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I
        KK I +  PW ++KSL++LKE +G     D+                    R+    IG+ LGEV  VD+ E    NWG  LRV++ +DV+K L RG  I
Subjt:  KKLITDTGPWFFDKSLLILKEPKGGNFGDDMEF------------------RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRG--I

Query:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGG--IAGEELPYGSWLRESV
         +E G   E RWI   YE+LP+FCY CG L H +K+C+EEN  G  +    L YG+W+R  V
Subjt:  FLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGG--IAGEELPYGSWLRESV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01050.1 zinc ion binding;nucleic acid binding8.0e-0635.71Show/hide
Query:  RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC
        R + MEI   LG   +VD++  IN + G   RV I+V+++KPLK  + +       DR+  + YE L   C  CG  GH +  C
Subjt:  RKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPLKRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKEC

AT3G42140.1 zinc ion binding;nucleic acid binding7.5e-0437.04Show/hide
Query:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEE-NQGGIAGEE
        + G+FLE    ++   +   YEKL +FC  CG L H   EC    NQG  A ++
Subjt:  KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEE-NQGGIAGEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAATTTTAGTCCAAGTGCTCTGAGTGAGTTTTGTTTTTGCTGGTTGCATTTAACAAATCCTTCATGGCTCGTCGGTCAGAGGAGGAGTTTCTTCATCAAGAAACT
TATAACGGATACCGGTCCATGGTTTTTCGATAAGTCTCTTCTTATTTTAAAGGAACCAAAAGGCGGCAACTTTGGAGACGACATGGAATTCAGGAAAGTGGCTATGGAAA
TTGGGAGCCTTCTTGGAGAGGTGGATCAGGTAGATTTAGATGAGGAGATAAATCATAACTGGGGCGGATCTCTACGTGTGAAAATACAAGTTGACGTCTCAAAGCCGTTA
AAAAGGGGAATTTTTTTAGAACCTGGCAACTCAAAGGAAGACAGATGGATCCCCATTACATATGAAAAATTGCCAGATTTTTGTTATGGGTGTGGCCATCTTGGTCACAC
CATTAAAGAATGTGAGGAAGAAAATCAGGGTGGGATAGCGGGAGAGGAGCTACCATATGGTTCTTGGCTGCGTGAGTCTGTGTTCCTAAAGACTAGAGAATCAAGTGTTC
CTCATGGTTCAATGATGAACCTTGCTGGACGTGGTAGGGGAAGGAATTGGGACGGAGGAAGAGGACGATGGAGGGAAGTAGTTCAAGAAGAAGATAGTGAAGATGATGCT
GAAAATCAAACCCAATGTGAGAGGACTGAACAAGAGAAAATGGAAGTCGGCGATAAGGAAAAGCGAGATCCGACGGTAATTCCGATCGACCCACCGCCACCTCAAGACAC
AACGGGAAAAACATCCAACGATAAAATAGATTCCAAATTCAATGAGAATATCATGGAAGTGGAACCTTGTGGGCTTGGGCCGAATTCTACATCTCAAGAAGCAAAGGTGG
GAGATTTTAGTGATACTGGAGACAAAGAGTACTTATCTAGCAAAGATGATAAAGTCAGAATGTTGGTAGGGAAAGGTAAAAGCTGGAAAAGAGTCCTTAGGCACAAAACA
GAAAAGGGTAAAGGGGATAAAATGGAAGCGTCTAGTCAACCTCTCGCTGGGGCAAAACATTCACTGGTGTTTGATGATGAAGGCTCTCATAAAAAACAACTGATGATGTC
AGACTTTGATTTGAATGCACAATCGATGGAGGCTGCTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAATTTTAGTCCAAGTGCTCTGAGTGAGTTTTGTTTTTGCTGGTTGCATTTAACAAATCCTTCATGGCTCGTCGGTCAGAGGAGGAGTTTCTTCATCAAGAAACT
TATAACGGATACCGGTCCATGGTTTTTCGATAAGTCTCTTCTTATTTTAAAGGAACCAAAAGGCGGCAACTTTGGAGACGACATGGAATTCAGGAAAGTGGCTATGGAAA
TTGGGAGCCTTCTTGGAGAGGTGGATCAGGTAGATTTAGATGAGGAGATAAATCATAACTGGGGCGGATCTCTACGTGTGAAAATACAAGTTGACGTCTCAAAGCCGTTA
AAAAGGGGAATTTTTTTAGAACCTGGCAACTCAAAGGAAGACAGATGGATCCCCATTACATATGAAAAATTGCCAGATTTTTGTTATGGGTGTGGCCATCTTGGTCACAC
CATTAAAGAATGTGAGGAAGAAAATCAGGGTGGGATAGCGGGAGAGGAGCTACCATATGGTTCTTGGCTGCGTGAGTCTGTGTTCCTAAAGACTAGAGAATCAAGTGTTC
CTCATGGTTCAATGATGAACCTTGCTGGACGTGGTAGGGGAAGGAATTGGGACGGAGGAAGAGGACGATGGAGGGAAGTAGTTCAAGAAGAAGATAGTGAAGATGATGCT
GAAAATCAAACCCAATGTGAGAGGACTGAACAAGAGAAAATGGAAGTCGGCGATAAGGAAAAGCGAGATCCGACGGTAATTCCGATCGACCCACCGCCACCTCAAGACAC
AACGGGAAAAACATCCAACGATAAAATAGATTCCAAATTCAATGAGAATATCATGGAAGTGGAACCTTGTGGGCTTGGGCCGAATTCTACATCTCAAGAAGCAAAGGTGG
GAGATTTTAGTGATACTGGAGACAAAGAGTACTTATCTAGCAAAGATGATAAAGTCAGAATGTTGGTAGGGAAAGGTAAAAGCTGGAAAAGAGTCCTTAGGCACAAAACA
GAAAAGGGTAAAGGGGATAAAATGGAAGCGTCTAGTCAACCTCTCGCTGGGGCAAAACATTCACTGGTGTTTGATGATGAAGGCTCTCATAAAAAACAACTGATGATGTC
AGACTTTGATTTGAATGCACAATCGATGGAGGCTGCTGGATAG
Protein sequenceShow/hide protein sequence
MSNFSPSALSEFCFCWLHLTNPSWLVGQRRSFFIKKLITDTGPWFFDKSLLILKEPKGGNFGDDMEFRKVAMEIGSLLGEVDQVDLDEEINHNWGGSLRVKIQVDVSKPL
KRGIFLEPGNSKEDRWIPITYEKLPDFCYGCGHLGHTIKECEEENQGGIAGEELPYGSWLRESVFLKTRESSVPHGSMMNLAGRGRGRNWDGGRGRWREVVQEEDSEDDA
ENQTQCERTEQEKMEVGDKEKRDPTVIPIDPPPPQDTTGKTSNDKIDSKFNENIMEVEPCGLGPNSTSQEAKVGDFSDTGDKEYLSSKDDKVRMLVGKGKSWKRVLRHKT
EKGKGDKMEASSQPLAGAKHSLVFDDEGSHKKQLMMSDFDLNAQSMEAAG