; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011993 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011993
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationchr1:36135483..36136188
RNA-Seq ExpressionLag0011993
SyntenyLag0011993
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059476.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]1.3e-1336.52Show/hide
Query:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS
        +++ W     LAS + D++ IS+K+ A V   W   +  WDLG RR +FD EI +++ L +++    +   RD     LE SG FS+KSTFLKL++    
Subjt:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS

Query:  LKTPLIDAIWKNYAP
        +  P+++ IWK   P
Subjt:  LKTPLIDAIWKNYAP

MCH99327.1 ribonuclease H protein [Trifolium medium]1.6e-1637.4Show/hide
Query:  EEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESND-WDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLK
        +  FW  ++ WVG+  L   FP LF+IST+++ +V   WN + ++ W+L +RR LF WE   W  L+ II+++ L  + D+  W L+K+GVFS KST+  
Subjt:  EEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESND-WDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLK

Query:  LSEITLSLKT------PLIDAIWKNYAPKKV
        +S++ ++ ++          AIWK  AP KV
Subjt:  LSEITLSLKT------PLIDAIWKNYAPKKV

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]1.3e-1345.78Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLE
        FWL++  W G   LA  FPDL+ IS K+EA V  CW++    WDLGFRRGLFD E+  W  ++E ++   L  + D  +W LE
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLE

XP_022151325.1 uncharacterized protein LOC111019288 [Momordica charantia]3.7e-1342.7Show/hide
Query:  LFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLSLKTPLI
        LF IS K EA +  CW +    WDLGFRRGLFD EI +W+ +++ ++A  +G + D  +W  + +G F++KS +LKL E    L + LI
Subjt:  LFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLSLKTPLI

XP_028101814.1 uncharacterized protein LOC114301100 [Camellia sinensis]3.7e-1336.22Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQ--EATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDA---IRLGGDRDETLWSLEKSGVFSSKSTFL
        FWL++  WVG D L + FP L+++S +Q     V +  ++ S +WDL FRR LF WE+     + E++     +R  G  D   W+ ++SG+F+  S + 
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQ--EATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDA---IRLGGDRDETLWSLEKSGVFSSKSTFL

Query:  KLSEITLSLKTPLIDAIWKNYAPKKVK
        K SE+T ++   +++ IWKN AP KV+
Subjt:  KLSEITLSLKTPLIDAIWKNYAPKKVK

TrEMBL top hitse value%identityAlignment
A0A392NHI5 Ribonuclease H protein (Fragment)7.8e-1737.4Show/hide
Query:  EEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESND-WDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLK
        +  FW  ++ WVG+  L   FP LF+IST+++ +V   WN + ++ W+L +RR LF WE   W  L+ II+++ L  + D+  W L+K+GVFS KST+  
Subjt:  EEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESND-WDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLK

Query:  LSEITLSLKT------PLIDAIWKNYAPKKV
        +S++ ++ ++          AIWK  AP KV
Subjt:  LSEITLSLKT------PLIDAIWKNYAPKKV

A0A5A7V9M3 THO complex subunit 14.0e-1335Show/hide
Query:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS
        E + W G + LA  FP+LF++S  ++A V  CW   ++ W+LG RR + D ++ +   ++EI+ +       D   W+   +G F +KSTFL L++ + S
Subjt:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS

Query:  LKTPLIDAIWKNYAPKKVKA
        +  PLI  IWK    KK  A
Subjt:  LKTPLIDAIWKNYAPKKVKA

A0A5D3BWG7 Transposon TX1 uncharacterized6.2e-1436.52Show/hide
Query:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS
        +++ W     LAS + D++ IS+K+ A V   W   +  WDLG RR +FD EI +++ L +++    +   RD     LE SG FS+KSTFLKL++    
Subjt:  ERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS

Query:  LKTPLIDAIWKNYAP
        +  P+++ IWK   P
Subjt:  LKTPLIDAIWKNYAP

A0A6J1D884 uncharacterized protein LOC1110178196.2e-1445.78Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLE
        FWL++  W G   LA  FPDL+ IS K+EA V  CW++    WDLGFRRGLFD E+  W  ++E ++   L  + D  +W LE
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLE

A0A6J1DAV1 uncharacterized protein LOC1110192881.8e-1342.7Show/hide
Query:  LFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLSLKTPLI
        LF IS K EA +  CW +    WDLGFRRGLFD EI +W+ +++ ++A  +G + D  +W  + +G F++KS +LKL E    L + LI
Subjt:  LFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLSLKTPLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATTCCAGAAGAGGGCTTTTGGCTTGAGAGAAACACCTGGGTTGGGAACGATAATTTAGCCTCCACCTTCCCTGACTTGTTTAATATTTCCACGAAGCAAGAGGC
CACTGTTGATCAATGCTGGAATTCGGAGTCAAATGACTGGGATTTGGGGTTCAGAAGAGGGCTTTTTGATTGGGAGATTCCTAGTTGGGTTGGGTTGATTGAGATAATTG
ATGCTATTCGGCTAGGTGGTGACAGAGATGAGACCTTATGGAGCCTAGAGAAGTCGGGGGTTTTCTCCTCAAAATCGACGTTCTTGAAACTTTCAGAAATTACTCTTTCC
CTCAAAACCCCTCTAATTGATGCCATCTGGAAAAACTATGCCCCAAAGAAGGTTAAGGCTGATTCTGAATCTTTGACCATCTTTTCCTTCATTGTCCCTTTGCTGCTACG
GGATGGAGAAGGGCAGAGGAAAGATTTTGTGGGGTATGGCGGTGAGAGCTCTATTGTGGAACTTATGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATATTCCAGAAGAGGGCTTTTGGCTTGAGAGAAACACCTGGGTTGGGAACGATAATTTAGCCTCCACCTTCCCTGACTTGTTTAATATTTCCACGAAGCAAGAGGC
CACTGTTGATCAATGCTGGAATTCGGAGTCAAATGACTGGGATTTGGGGTTCAGAAGAGGGCTTTTTGATTGGGAGATTCCTAGTTGGGTTGGGTTGATTGAGATAATTG
ATGCTATTCGGCTAGGTGGTGACAGAGATGAGACCTTATGGAGCCTAGAGAAGTCGGGGGTTTTCTCCTCAAAATCGACGTTCTTGAAACTTTCAGAAATTACTCTTTCC
CTCAAAACCCCTCTAATTGATGCCATCTGGAAAAACTATGCCCCAAAGAAGGTTAAGGCTGATTCTGAATCTTTGACCATCTTTTCCTTCATTGTCCCTTTGCTGCTACG
GGATGGAGAAGGGCAGAGGAAAGATTTTGTGGGGTATGGCGGTGAGAGCTCTATTGTGGAACTTATGGCTTGA
Protein sequenceShow/hide protein sequence
MYIPEEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNSESNDWDLGFRRGLFDWEIPSWVGLIEIIDAIRLGGDRDETLWSLEKSGVFSSKSTFLKLSEITLS
LKTPLIDAIWKNYAPKKVKADSESLTIFSFIVPLLLRDGEGQRKDFVGYGGESSIVELMA