CuGenDBv2

Gene ID	Lag0011996
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA polymerase epsilon catalytic subunit
Genome location	chr1:36171877..36173476
RNA-Seq Expression	Lag0011996
Synteny	Lag0011996
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0008622 - epsilon DNA polymerase complex (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR006133 - DNA-directed DNA polymerase, family B, exonuclease domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG8655124.1 hypothetical protein MANES_04G006100v8 [Manihot esculenta]

2.2e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

KAG8655125.1 hypothetical protein MANES_04G006100v8 [Manihot esculenta]

2.2e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

KAG8655126.1 hypothetical protein MANES_04G006100v8 [Manihot esculenta]

2.2e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

XP_011046263.1 PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like [Populus euphratica]

3.8e-11

94.44

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HM+EVKPGIYVTYNGDYFDW FLESRAAYHGFKMSD
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

XP_021609373.1 DNA polymerase epsilon catalytic subunit A-like [Manihot esculenta]

2.2e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

TrEMBL top hits

e value

%identity

Alignment

A0A2C9VYG0 DNA polymerase epsilon catalytic subunit

1.1e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

A0A2C9VYJ6 DNA polymerase epsilon catalytic subunit

1.1e-11

94.59

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Query:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        VHMQEVKPGIYVTYNGDYFDW FLESRAAYHG KMSD
Subjt:  VHMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

A0A5N5N2H6 DNA polymerase epsilon catalytic subunit

1.8e-11

94.44

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HM+EVKPGIYVTYNGDYFDW FLESRAAYHGFKMSD
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

A0A6J1DHX7 DNA polymerase epsilon catalytic subunit

1.8e-11

94.44

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HM+EVKPGIYVTYNGDYFDW FLESRAAYHGFKMSD
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

A0A6J1DJK0 DNA polymerase epsilon catalytic subunit

1.8e-11

94.44

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HM+EVKPGIYVTYNGDYFDW FLESRAAYHGFKMSD
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

SwissProt top hits

e value

%identity

Alignment

F4HW04 DNA polymerase epsilon catalytic subunit A

1.9e-10

72.22

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HMQE+KPGIYVTYNGD+FDW F+E RA++HG KM++
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

F4IFN6 DNA polymerase epsilon catalytic subunit B

1.9e-10

72.22

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HMQE+KPGIYVTYNGD+FDW F+E RA++HG KM++
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

P87154 DNA polymerase epsilon catalytic subunit A

2.2e-06

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        H++  KP + VTYNGD+FDW F+++RAA+HG  +++
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

Q07864 DNA polymerase epsilon catalytic subunit A

3.4e-07

67.65

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKM
        H+QE KP I VTYNGD+FDW F+E+RAA HG  M
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKM

Q9WVF7 DNA polymerase epsilon catalytic subunit A

3.4e-07

67.65

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKM
        H+QE KP I VTYNGD+FDW F+E+RAA HG  M
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKM

Arabidopsis top hits

e value

%identity

Alignment

AT1G08260.1 DNA polymerase epsilon catalytic subunit

1.4e-11

72.22

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HMQE+KPGIYVTYNGD+FDW F+E RA++HG KM++
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

AT2G27120.1 DNA polymerase epsilon catalytic subunit

1.4e-11

72.22

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Query:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD
        HMQE+KPGIYVTYNGD+FDW F+E RA++HG KM++
Subjt:  HMQEVKPGIYVTYNGDYFDWSFLESRAAYHGFKMSD

Sequences

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CDS sequence

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ATGGGCGTCGGAGAGAGGGTAACTCCCGACGCCGCTTTAGGTAGCGTCGGGAGAAGGTCGTTTAAATCCCTAAATCGAAAAAAGCCCCTTCATTTTCTCTTCTTCATCCG
AAAATCGCCCACCCTCGTCTGTTTCGCCCCCTGCGCACCAATCTCCCGCGCCACCGGTTCTCCTCCGTCGTCGTCGTCGTTTATCTCGTGCCACCGCCGTTGTTTTGCTC
GTGCTTCCGCCGTCGTTCCACTCCGTAGCCATCGTCTTTTCTCGCTTCAACAGAGCTTCTCAACTGTGGTTGTCCATATGCAAGAGGTGAAACCTGGTATCTACGTCACC
TACAATGGCGACTATTTTGACTGGTCGTTCCTTGAAAGCAGAGCAGCATATCATGGATTTAAAATGAGTGATGCAAAACTTGAGCAATCAGAAGCAAAGATTATCCAGGT
GGAATCAATGGTGGAGGAAGAGAGGAGTGCAAGACTTGAAACGAAAGCTGAGCTAGAAAACTTGAGAGGAATGATCCAACAATTTATGTCGTCACAAGGAGGAGAAACAT
CGGAATAG

mRNA sequence

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Protein sequence

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MGVGERVTPDAALGSVGRRSFKSLNRKKPLHFLFFIRKSPTLVCFAPCAPISRATGSPPSSSSFISCHRRCFARASAVVPLRSHRLFSLQQSFSTVVVHMQEVKPGIYVT
YNGDYFDWSFLESRAAYHGFKMSDAKLEQSEAKIIQVESMVEEERSARLETKAELENLRGMIQQFMSSQGGETSE

Lag0011996 (gene) of Sponge gourd (AG-4) v1 genome