; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012000 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012000
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:36204491..36205462
RNA-Seq ExpressionLag0012000
SyntenyLag0012000
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]9.8e-4147.83Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        K+  P K +L   +KYD   D + HLD Y  W D +G+++AIRCR FSFTLTGST  WFQ+L+R+SISSFKELA AFVTQF G   + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRI----
          ES+ DY++RFN+E L+VEG  + V L+  I G++D++L+ S GK    T++E  SRAQ YMSV EL+ SK     +    +  R+R  +KR  +    
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRI----

Query:  DDGGRGR
         D G+GR
Subjt:  DDGGRGR

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]9.2e-3950Show/hide
Query:  PWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQLGES
        P K +L   +++D   D V HLD Y+ WMD +GVS+A++CR FS TL+GS   WF++L+R SISSFK LA AFVTQF+G + + +P   LLT+KQ+  ES
Subjt:  PWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQLGES

Query:  MCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDK
        + DY++RFNEE L+VEG    V+L+A +  + D+ L  S GK  P T++E +SRAQKYMS  E   SK  E E K+S   +RER  DK
Subjt:  MCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDK

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.3e-4250Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        K+ +  K +L    +YD   D + HLD Y+ W D + + +AIRCR FSFTLTGS   WF++L+R SISSFKELA AFVTQF+G + + KP   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLR-SKSSEHERKRSSSFDRERRKDKRPRI---
          ES+ +Y++RFNEE L+VEG  + VAL+A + G++D+RL+ S GK  P T+ E +SRAQKYMS  EL+  S+  E ER   S+  RERR +KR R    
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLR-SKSSEHERKRSSSFDRERRKDKRPRI---

Query:  -DDGGRGR
          D G GR
Subjt:  -DDGGRGR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.5e-3844.29Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        ++  P K +L   +++D   D V HLD Y+ WMD +GVS+A+RCR FS TL GS   WF++L+R SISSFK LA AFVTQF+G + + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG
          ES+ DY++RFNEE L+VEG  + V+L+A + G+ D+ L  S GK  P T++E +SRAQ+YMS  E   SK     ++     +R   K +  R +   
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG

Query:  RGRAHPLPRK
        R      PRK
Subjt:  RGRAHPLPRK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]7.8e-3843.81Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        ++  P K +L   + +D   + V HLD Y+ WMD +GVSDAIRCR FS TL GS   WF++L+R SISSFK LA AF+TQF+G + + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG
          ES+ DY++RFNEE L++EG  + V+L+A + G+ D+ L  S  K  P T++E +SRAQ+YMS  E   SK     ++     +R   K +  R +   
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG

Query:  RGRAHPLPRK
        RG     PRK
Subjt:  RGRAHPLPRK

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166194.7e-4147.83Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        K+  P K +L   +KYD   D + HLD Y  W D +G+++AIRCR FSFTLTGST  WFQ+L+R+SISSFKELA AFVTQF G   + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRI----
          ES+ DY++RFN+E L+VEG  + V L+  I G++D++L+ S GK    T++E  SRAQ YMSV EL+ SK     +    +  R+R  +KR  +    
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRI----

Query:  DDGGRGR
         D G+GR
Subjt:  DDGGRGR

A0A6J1D7D2 uncharacterized protein LOC1110183074.4e-3950Show/hide
Query:  PWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQLGES
        P K +L   +++D   D V HLD Y+ WMD +GVS+A++CR FS TL+GS   WF++L+R SISSFK LA AFVTQF+G + + +P   LLT+KQ+  ES
Subjt:  PWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQLGES

Query:  MCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDK
        + DY++RFNEE L+VEG    V+L+A +  + D+ L  S GK  P T++E +SRAQKYMS  E   SK  E E K+S   +RER  DK
Subjt:  MCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDK

A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-3844.29Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        ++  P K +L   +++D   D V HLD Y+ WMD +GVS+A+RCR FS TL GS   WF++L+R SISSFK LA AFVTQF+G + + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG
          ES+ DY++RFNEE L+VEG  + V+L+A + G+ D+ L  S GK  P T++E +SRAQ+YMS  E   SK     ++     +R   K +  R +   
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG

Query:  RGRAHPLPRK
        R      PRK
Subjt:  RGRAHPLPRK

A0A6J1DZ49 uncharacterized protein LOC1110248511.1e-4250Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        K+ +  K +L    +YD   D + HLD Y+ W D + + +AIRCR FSFTLTGS   WF++L+R SISSFKELA AFVTQF+G + + KP   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLR-SKSSEHERKRSSSFDRERRKDKRPRI---
          ES+ +Y++RFNEE L+VEG  + VAL+A + G++D+RL+ S GK  P T+ E +SRAQKYMS  EL+  S+  E ER   S+  RERR +KR R    
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLR-SKSSEHERKRSSSFDRERRKDKRPRI---

Query:  -DDGGRGR
          D G GR
Subjt:  -DDGGRGR

A0A6J1E1E7 uncharacterized protein LOC1110255483.8e-3843.81Show/hide
Query:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ
        ++  P K +L   + +D   + V HLD Y+ WMD +GVSDAIRCR FS TL GS   WF++L+R SISSFK LA AF+TQF+G + + +P   LLT+KQ+
Subjt:  KDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQCKPHINLLTVKQQ

Query:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG
          ES+ DY++RFNEE L++EG  + V+L+A + G+ D+ L  S  K  P T++E +SRAQ+YMS  E   SK     ++     +R   K +  R +   
Subjt:  LGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKRPRIDDGG

Query:  RGRAHPLPRK
        RG     PRK
Subjt:  RGRAHPLPRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGTAGTCGAGGCCGAGGCTAGAGCAGCCGAGGCCGAGGGCAAGAAGGATAACTCCCCTTGGAAGATTGAGCTTCTGAACACACGAAAGTATGATGAC
AAGAAGGACACTGTGCAACACCTAGATACCTACAAGTCATGGATGGACTTCCACGGTGTTTCAGATGCAATCAGGTGTCGTTCCTTTTCTTTCACTTTAACAGGA
TCAACGATGCAATGGTTTCAGAGATTGCAAAGGAGATCCATTAGTTCTTTCAAAGAACTAGCCTGTGCGTTCGTCACACAGTTCATGGGAGCCAAAGAACAATGC
AAGCCCCACATTAATCTTCTAACTGTCAAGCAACAACTAGGTGAGAGTATGTGTGATTACATAAGTCGTTTTAATGAAGAAGCACTCAAGGTTGAAGGATACAAC
GAAGGAGTAGCCCTGGTAGCCGTAATCGTTGGACTGGAGGACAAGAGATTACTTAACTCAATAGGTAAGAGTCAACCCTGTACCTATGCTGAGTTTGTCTCCAGA
GCCCAGAAATATATGAGTGTAGAGGAGTTGCTCAGATCAAAGAGTTCAGAACATGAACGTAAGAGATCTTCTTCATTCGATAGAGAAAGAAGGAAGGACAAAAGA
CCACGGATAGATGATGGTGGTCGAGGTCGAGCACACCCCCTTCCTCGAAAAGACGATTCCAACGCAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGTAGTCGAGGCCGAGGCTAGAGCAGCCGAGGCCGAGGGCAAGAAGGATAACTCCCCTTGGAAGATTGAGCTTCTGAACACACGAAAGTATGATGAC
AAGAAGGACACTGTGCAACACCTAGATACCTACAAGTCATGGATGGACTTCCACGGTGTTTCAGATGCAATCAGGTGTCGTTCCTTTTCTTTCACTTTAACAGGA
TCAACGATGCAATGGTTTCAGAGATTGCAAAGGAGATCCATTAGTTCTTTCAAAGAACTAGCCTGTGCGTTCGTCACACAGTTCATGGGAGCCAAAGAACAATGC
AAGCCCCACATTAATCTTCTAACTGTCAAGCAACAACTAGGTGAGAGTATGTGTGATTACATAAGTCGTTTTAATGAAGAAGCACTCAAGGTTGAAGGATACAAC
GAAGGAGTAGCCCTGGTAGCCGTAATCGTTGGACTGGAGGACAAGAGATTACTTAACTCAATAGGTAAGAGTCAACCCTGTACCTATGCTGAGTTTGTCTCCAGA
GCCCAGAAATATATGAGTGTAGAGGAGTTGCTCAGATCAAAGAGTTCAGAACATGAACGTAAGAGATCTTCTTCATTCGATAGAGAAAGAAGGAAGGACAAAAGA
CCACGGATAGATGATGGTGGTCGAGGTCGAGCACACCCCCTTCCTCGAAAAGACGATTCCAACGCAACTTGA
Protein sequenceShow/hide protein sequence
MAKVVEAEARAAEAEGKKDNSPWKIELLNTRKYDDKKDTVQHLDTYKSWMDFHGVSDAIRCRSFSFTLTGSTMQWFQRLQRRSISSFKELACAFVTQFMGAKEQC
KPHINLLTVKQQLGESMCDYISRFNEEALKVEGYNEGVALVAVIVGLEDKRLLNSIGKSQPCTYAEFVSRAQKYMSVEELLRSKSSEHERKRSSSFDRERRKDKR
PRIDDGGRGRAHPLPRKDDSNAT