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Lag0012007 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012007
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S28
Genome locationchr1:36255570..36257271
RNA-Seq ExpressionLag0012007
SyntenyLag0012007
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9456004.1 hypothetical protein C3L33_12118, partial [Rhododendron williamsianum]1.4e-0596.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

KAF4398161.1 hypothetical protein G4B88_019882 [Cannabis sativa]1.3e-0655.22Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKD--QSGKAIFLPYSSLRGKLEETTPVSDKYFQSISDR
        MGRTGSRGQVTQVRVKFLDDQNR+ MRNVK   + G  + L  S    + + T   S  Y Q   DR
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKD--QSGKAIFLPYSSLRGKLEETTPVSDKYFQSISDR

KAG6603220.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]4.8e-0679.49Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKDQSGKAIFL
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK     + FL
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKDQSGKAIFL

KAG7033529.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-0596.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

KGN53863.2 hypothetical protein Csa_019174 [Cucumis sativus]1.4e-0596.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

TrEMBL top hitse value%identityAlignment
A0A0A0LPR2 Uncharacterized protein6.8e-0696.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

A0A1S3CD61 40S ribosomal protein S28-16.8e-0696.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

A0A6J1E1S7 40S ribosomal protein S28-16.8e-0696.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

A0A6J1HTG7 40S ribosomal protein S28-16.8e-0696.67Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNRY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

A0A7J6HTG1 Uncharacterized protein6.2e-0755.22Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKD--QSGKAIFLPYSSLRGKLEETTPVSDKYFQSISDR
        MGRTGSRGQVTQVRVKFLDDQNR+ MRNVK   + G  + L  S    + + T   S  Y Q   DR
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKD--QSGKAIFLPYSSLRGKLEETTPVSDKYFQSISDR

SwissProt top hitse value%identityAlignment
P46302 40S ribosomal protein S281.6e-0793.33Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKFLDDQNR  MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

Q6PBK3 40S ribosomal protein S282.8e-0470Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        +GRTGS+GQ TQVRV+F+DD NR  +RNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

Q7S6W5 40S ribosomal protein S282.1e-0473.33Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        +GRTGSRG VTQVRV+F+DDQ R  +RNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

Q90YP3 40S ribosomal protein S282.8e-0470Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        +GRTGS+GQ TQVRV+F+DD NR  +RNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

Q9SR73 40S ribosomal protein S28-11.2e-0483.33Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKF  D +RY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein8.8e-0683.33Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKF  D +RY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein8.8e-0683.33Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKF  D +RY MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK

AT5G64140.1 ribosomal protein S282.6e-0580Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK
        MGRTGSRGQVTQVRVKF  D +R+ MRNVK
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYNMRNVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACAACATGAGGAATGTTAAGGACCAGTCGGGGAAGGCGAT
ATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGAAACTACTCCTGTCTCCGACAAATATTTTCAGTCAATTTCCGACAGGAACTCAAAACCCCAACCATTGAAAA
ATGGTTCTATGCTCGCGTCACAAGCATCTATTGAAAGCTCATCAATGGCAGTCTCAATGGTGGATTACAATAAGGTGGACAAGCCGAGGAGATTGCAATTTGGGGAAAAT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACAACATGAGGAATGTTAAGGACCAGTCGGGGAAGGCGAT
ATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGAAACTACTCCTGTCTCCGACAAATATTTTCAGTCAATTTCCGACAGGAACTCAAAACCCCAACCATTGAAAA
ATGGTTCTATGCTCGCGTCACAAGCATCTATTGAAAGCTCATCAATGGCAGTCTCAATGGTGGATTACAATAAGGTGGACAAGCCGAGGAGATTGCAATTTGGGGAAAAT
TAA
Protein sequenceShow/hide protein sequence
MGRTGSRGQVTQVRVKFLDDQNRYNMRNVKDQSGKAIFLPYSSLRGKLEETTPVSDKYFQSISDRNSKPQPLKNGSMLASQASIESSSMAVSMVDYNKVDKPRRLQFGEN