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Lag0012010 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012010
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr1:36273526..36276022
RNA-Seq ExpressionLag0012010
SyntenyLag0012010
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_028090832.1 uncharacterized protein LOC114291041 [Camellia sinensis]4.0e-1858.33Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        M EFR I+L NV YKI++K++ NRLK+VL S+IS TQS F+ GRLITDN +V FE  H L N+R+ K G + LK DMSK YD++
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]6.8e-1859.52Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        M EFR I+L NV YKI++KV+ NRLK+VL  IIS TQS FV GRLITDNV+V +E +H ++ R+  K G VALK D+SK YD++
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

XP_030923826.1 uncharacterized protein LOC115950728 [Quercus lobata]5.2e-1854.76Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        M ++R I+L NV YKI++KV+ NRLK++L  IIS TQS F+ GRLITDN++V +EC+HA++ R+  K G +ALK D+SK YD++
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

XP_030942013.1 uncharacterized protein LOC115967068 [Quercus lobata]1.0e-1860.71Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        M EFR I+L NV YKIV+KV+ NRLKKVL +IIS+ QS FV GR ITDNV+V FE +H +N +R  K G++A+K DMSK YD++
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

XP_035551682.1 uncharacterized protein LOC118349865 [Juglans regia]4.7e-1963.41Show/hide
Query:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        EFR I+L NV YKI++K I NRLKK+L SIISQTQ  FV GRLI+DNV+V FE +H +N + S K G +ALK DMSKTYD++
Subjt:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

TrEMBL top hitse value%identityAlignment
A0A2N9ELU5 Uncharacterized protein1.9e-1860.71Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        M E+R I+L NV+YKI++KV+ NR K VL SIIS+ QS FV GRLITDNV+V FE IH LNN+R  +   +ALK DMSK YD++
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

A0A2N9G161 Reverse transcriptase domain-containing protein1.5e-1845.08Show/hide
Query:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLS
        E+R I+L NV YK+++KV+ NRLKKVL  ++S+TQS FV GR+ITDNV++ FE +H ++N+RS K G +ALK DMSK YD++  E           G+  
Subjt:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLS

Query:  NSLEVVSESLFENSRSKAIASE
        N + ++ E +   S S  I  E
Subjt:  NSLEVVSESLFENSRSKAIASE

A0A2N9G1P5 Reverse transcriptase domain-containing protein1.5e-1845.08Show/hide
Query:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLS
        E+R I+L NV YK+++KV+ NRLKKVL  ++S+TQS FV GR+ITDNV++ FE +H ++N+RS K G +ALK DMSK YD++  E           G+  
Subjt:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLS

Query:  NSLEVVSESLFENSRSKAIASE
        N + ++ E +   S S  I  E
Subjt:  NSLEVVSESLFENSRSKAIASE

A0A6P9FAP1 uncharacterized protein LOC1183498652.3e-1963.41Show/hide
Query:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        EFR I+L NV YKI++K I NRLKK+L SIISQTQ  FV GRLI+DNV+V FE +H +N + S K G +ALK DMSKTYD++
Subjt:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

A0A7N2LIH6 Uncharacterized protein5.0e-1958.54Show/hide
Query:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        EFR I+L NV YKI++KV+ NRLKKVL  +I + QS FV GR+ITDNV+V FE +H++N RR  K G++A+K DMSK YD++
Subjt:  EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein5.8e-0429.76Show/hide
Query:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL
        ++ FR I+L N+  KI+ K++ NR+++ + +II   Q  F+ G     N+      IH +N  +     I++L  D  K +DK+
Subjt:  MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKL

P14381 Transposon TX1 uncharacterized 149 kDa protein2.6e-0436.9Show/hide
Query:  FRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRE
        +R ++L +  YKIV K I+ RLK VL  +I   QS  V GR I DNV +  + +H    RR+  S +  L  D  K +D++  +
Subjt:  FRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRE

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases5.7e-0730.48Show/hide
Query:  ITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLSNSLEVVSESLFENSRSKA
        +  RLK ++ ++I   Q++F+ GR+ TDN+V   E +H++  ++  K G + LK D+ K YD++    D+  D   S G+    L  ++ S F    ++ 
Subjt:  ITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLSNSLEVVSESLFENSRSKA

Query:  IASEV
        +A EV
Subjt:  IASEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAATTCAGGTCTATCAATTTGTTCAATGTGACTTACAAAATTGTGACAAAAGTAATTACCAACAGACTCAAAAAAGTCCTAGACTCCATTATCTCTCAAACTCA
ATCAACTTTCGTGTCGGGGAGATTGATAACAGATAACGTGGTGGTAGGTTTCGAGTGTATTCATGCCCTTAATAACAGAAGATCGGATAAAAGTGGGATCGTCGCTTTGA
AGTTCGATATGAGCAAGACGTACGACAAGCTAACTAGAGAACTTGACCACAAGTCCGATGCAAGACAATCCGGTGGCTATTTGAGCAATTCGCTTGAAGTTGTGTCGGAG
TCGCTGTTCGAGAACTCGAGATCTAAAGCAATAGCGTCTGAAGTAGTTTCGGATCGAGATCTAAAGTTGTTCGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAATTCAGGTCTATCAATTTGTTCAATGTGACTTACAAAATTGTGACAAAAGTAATTACCAACAGACTCAAAAAAGTCCTAGACTCCATTATCTCTCAAACTCA
ATCAACTTTCGTGTCGGGGAGATTGATAACAGATAACGTGGTGGTAGGTTTCGAGTGTATTCATGCCCTTAATAACAGAAGATCGGATAAAAGTGGGATCGTCGCTTTGA
AGTTCGATATGAGCAAGACGTACGACAAGCTAACTAGAGAACTTGACCACAAGTCCGATGCAAGACAATCCGGTGGCTATTTGAGCAATTCGCTTGAAGTTGTGTCGGAG
TCGCTGTTCGAGAACTCGAGATCTAAAGCAATAGCGTCTGAAGTAGTTTCGGATCGAGATCTAAAGTTGTTCGCTTGA
Protein sequenceShow/hide protein sequence
MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLSNSLEVVSE
SLFENSRSKAIASEVVSDRDLKLFA