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Lag0012027 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012027
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:36507028..36507411
RNA-Seq ExpressionLag0012027
SyntenyLag0012027
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]1.5e-1445.22Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K  RK KLV EE++DF  T+  VTL DFFP  FL D  ++ P ++ CHA+NA EE        +     +D   F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-1543.22Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR+N +QK ++K K  RKPKLV EE++DF   +  VT+ D FP  FL D  ++ PE++TCH +NA EE    S   +     ++   F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNSNVA
        PQ TK  ++  L NS  +
Subjt:  PQATKNAIVETLKNSNVA

KAA0051503.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1446.09Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K   K KLV EE++DF  T+  VTL DFFP  FL D  ++ P +V CHA+NA EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1444.35Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K  +K KL+ EE++DF  T+  VTL +FFP  FL D  ++ PE+V CHA++A EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

TYK24162.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1446.09Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K   K KLV EE++DF  T+  VTL DFFP  FL D  ++ P +V CHA+NA EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein1.9e-1543.22Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR+N +QK ++K K  RKPKLV EE++DF   +  VT+ D FP  FL D  ++ PE++TCH +NA EE    S   +     ++   F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNSNVA
        PQ TK  ++  L NS  +
Subjt:  PQATKNAIVETLKNSNVA

A0A5A7U6I3 Retrotransposon gag protein9.3e-1546.09Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K   K KLV EE++DF  T+  VTL DFFP  FL D  ++ P +V CHA+NA EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.2e-1444.35Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K  +K KL+ EE++DF  T+  VTL +FFP  FL D  ++ PE+V CHA++A EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

A0A5D3DKW9 Retrotransposon gag protein9.3e-1546.09Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K   K KLV EE++DF  T+  VTL DFFP  FL D  ++ P +V CHA+NA EE        +     +D L F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

A0A5D3E3J4 Uncharacterized protein7.1e-1545.22Show/hide
Query:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL
        +RNYRR N +QK ++K K  RK KLV EE++DF  T+  VTL DFFP  FL D  ++ P ++ CHA+NA EE        +     +D   F +DDL+SL
Subjt:  FRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSL

Query:  PQATKNAIVETLKNS
        PQ TK  ++  L NS
Subjt:  PQATKNAIVETLKNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAGGAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTTTGAC
TCGACATCCGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCTGTCTCAGGTGATGACTAAGCCAGAAGATTCACTTTCATTCATAATAGATGATTTGGTGTCACTCCCTCAAGCAACCAAAAATGCTATTGTT
GAAACATTGAAAAATTCTAACGTTGCAGACGTTCCAGACTTGCAAGGACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAGGAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTTTGAC
TCGACATCCGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCTGTCTCAGGTGATGACTAAGCCAGAAGATTCACTTTCATTCATAATAGATGATTTGGTGTCACTCCCTCAAGCAACCAAAAATGCTATTGTT
GAAACATTGAAAAATTCTAACGTTGCAGACGTTCCAGACTTGCAAGGACATTGA
Protein sequenceShow/hide protein sequence
MFRNYRRKNMSQKQRRKIKGLRKPKLVVEENQDFVLTRHPVTLKDFFPKNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSLSQVMTKPEDSLSFIIDDLVSLPQATKNAIV
ETLKNSNVADVPDLQGH