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Lag0012033 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012033
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:36625208..36626357
RNA-Seq ExpressionLag0012033
SyntenyLag0012033
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG69315.1 hypothetical protein EZV62_004250 [Acer yangbiense]7.5e-1432.68Show/hide
Query:  DDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK------RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHA
        +++ +   NL + +E+ +     +D+  +    V  C VGKVL+ + VN +A K      + + VL  P GA   + + F K  FWV+I+++P+  +   
Subjt:  DDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK------RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHA

Query:  MARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENS
        MA+ L   IG   E+  E    W G  +RV+V +D+TRPL+R +RL  S++NS
Subjt:  MARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENS

TXG70623.1 hypothetical protein EZV62_005558 [Acer yangbiense]9.7e-1433.33Show/hide
Query:  LGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA----------LKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARAL
        L L E+E   + + + +    +  + +   GK+L+S+ VN DA            +A+ VLV P G      + F + AFWV+I+ VPL  +T  + RAL
Subjt:  LGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA----------LKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARAL

Query:  GSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRL
        G++IG  +E+   G GD +G  +RVRV++D+ +P+R ++R+
Subjt:  GSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRL

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.8e-2127.5Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK---------------------------------------------
        +D++T+ W +   + +E + V I    P+L    V++C V K+ TS+ ++ +A++                                             
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK---------------------------------------------

Query:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
        +++ VL SP+  + P  ++F  CAFW++I+ +P   ++  MA  LG+ +G  EE+ G+G   W GP +RVRV +DV++PLRR ++L+ S     WCP++Y
Subjt:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]1.3e-1828Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALKRAM------------------------------------------
        +D++TE W N  L++E+ + + I  + PL+    VQ  AVGK+ TS+ ++ +A +  M                                          
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALKRAM------------------------------------------

Query:  ---FVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
            VL SP+  D P  ++F   A W++I+ +P   +   MA+ LG+ IG  EE+   G  +W GP +RVRV +D+++P +R +++R   E   WCP++Y
Subjt:  ---FVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]2.2e-1828.5Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA---------------------------------------------LK
        +DD+T+ W N  L +EE   + I +  P+L    +Q+CAVGK+  S+ +  +A                                               
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA---------------------------------------------LK

Query:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
        +++ +LV  + A+ P  ID + CAFWV+I+ +    +T  MA+ LG+ +G  EEV G    DW+ P + VRV ++V +PLRR ++++ S     WCP++Y
Subjt:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

TrEMBL top hitse value%identityAlignment
A0A5C7IMP3 CCHC-type domain-containing protein4.7e-1433.33Show/hide
Query:  LGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA----------LKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARAL
        L L E+E   + + + +    +  + +   GK+L+S+ VN DA            +A+ VLV P G      + F + AFWV+I+ VPL  +T  + RAL
Subjt:  LGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA----------LKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARAL

Query:  GSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRL
        G++IG  +E+   G GD +G  +RVRV++D+ +P+R ++R+
Subjt:  GSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRL

A0A5C7IMZ7 DUF4283 domain-containing protein2.3e-1335.59Show/hide
Query:  DIPLLDDATVQVCAVGKVLTSRFVN--PDALKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIM
        DI ++D  T       +    R +N  P +  +A+ VLV P G      + F + AFWV+I+ VPL  +T  + RA+G++IG  +E+   G GD++G  +
Subjt:  DIPLLDDATVQVCAVGKVLTSRFVN--PDALKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIM

Query:  RVRVVLDVTRPLRRVVRL
        RVRV++D+ +PLR ++R+
Subjt:  RVRVVLDVTRPLRRVVRL

A0A6J1D765 uncharacterized protein LOC1110179022.3e-2127.5Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK---------------------------------------------
        +D++T+ W +   + +E + V I    P+L    V++C V K+ TS+ ++ +A++                                             
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALK---------------------------------------------

Query:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
        +++ VL SP+  + P  ++F  CAFW++I+ +P   ++  MA  LG+ +G  EE+ G+G   W GP +RVRV +DV++PLRR ++L+ S     WCP++Y
Subjt:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

A0A6J1DP89 uncharacterized protein LOC1110229326.4e-1928Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALKRAM------------------------------------------
        +D++TE W N  L++E+ + + I  + PL+    VQ  AVGK+ TS+ ++ +A +  M                                          
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALKRAM------------------------------------------

Query:  ---FVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
            VL SP+  D P  ++F   A W++I+ +P   +   MA+ LG+ IG  EE+   G  +W GP +RVRV +D+++P +R +++R   E   WCP++Y
Subjt:  ---FVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

A0A6J1DVS4 uncharacterized protein LOC1110235551.1e-1828.5Show/hide
Query:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA---------------------------------------------LK
        +DD+T+ W N  L +EE   + I +  P+L    +Q+CAVGK+  S+ +  +A                                               
Subjt:  IDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDA---------------------------------------------LK

Query:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY
        +++ +LV  + A+ P  ID + CAFWV+I+ +    +T  MA+ LG+ +G  EEV G    DW+ P + VRV ++V +PLRR ++++ S     WCP++Y
Subjt:  RAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGSVIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAGTTGACGAAGGGGCTATTGATGATCTCACAGAGCAGTGGAACAATCTGGGCCTGTCGGAAGAGGAAACGAAGGCGGTGCCGATACCGGATGATATTCCGTT
GCTCGATGATGCGACTGTGCAGGTATGTGCGGTGGGAAAGGTGCTGACTTCCCGTTTTGTGAATCCCGATGCGTTAAAGAGGGCGATGTTCGTTCTGGTATCTCCCTCGG
GTGCGGATAGCCCTACACTTATTGACTTCACGAAGTGTGCGTTTTGGGTACGTATCAATGAGGTGCCGCTGAATTTCCTTACCCATGCAATGGCTCGGGCACTTGGTAGT
GTTATTGGCCATGCTGAGGAGGTGTCGGGGGAGGGGTGTGGGGACTGGATAGGACCTATTATGAGAGTGCGAGTTGTGTTGGACGTTACGAGGCCGCTGCGTCGGGTGGT
AAGGTTGCGAGGGAGCATGGAGAACTCTAGGTGGTGCCCAATCCAATATGCCTGTTCAGAAGGTTGGGGAGGAAGAGGGGGGTGGCCTGAGGGGGAGGGCAGGGGCGATT
GTGATCGGTTTCAAAAGGGACGGGGCAAGGGTGTGGGGCGAGGGAGTGGTAGCGCAAGTGAGGGGGAGGAGGGGCCGAAGTCTGGTACAGATGTTGGGCGTGGTTTGAAT
GCGGGTAACGAGTCGAGTTCGGGTGTAGGGCCTTCTGCTGTAGATGTGGTTCAGCCAACGATTCCGCCTCTGACCGCAGTTGGGGCTCCCTCTCCAGTGGTGATATCGGC
TACGTTGGATAAGGGAAAGGTAGTGGTAGGGGATCAGCCCCTGGCGCATGTGATAGGAGGTGGTGTTGTGCCCCCTATTGTGTCGGTTTCGGGTAGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAGTTGACGAAGGGGCTATTGATGATCTCACAGAGCAGTGGAACAATCTGGGCCTGTCGGAAGAGGAAACGAAGGCGGTGCCGATACCGGATGATATTCCGTT
GCTCGATGATGCGACTGTGCAGGTATGTGCGGTGGGAAAGGTGCTGACTTCCCGTTTTGTGAATCCCGATGCGTTAAAGAGGGCGATGTTCGTTCTGGTATCTCCCTCGG
GTGCGGATAGCCCTACACTTATTGACTTCACGAAGTGTGCGTTTTGGGTACGTATCAATGAGGTGCCGCTGAATTTCCTTACCCATGCAATGGCTCGGGCACTTGGTAGT
GTTATTGGCCATGCTGAGGAGGTGTCGGGGGAGGGGTGTGGGGACTGGATAGGACCTATTATGAGAGTGCGAGTTGTGTTGGACGTTACGAGGCCGCTGCGTCGGGTGGT
AAGGTTGCGAGGGAGCATGGAGAACTCTAGGTGGTGCCCAATCCAATATGCCTGTTCAGAAGGTTGGGGAGGAAGAGGGGGGTGGCCTGAGGGGGAGGGCAGGGGCGATT
GTGATCGGTTTCAAAAGGGACGGGGCAAGGGTGTGGGGCGAGGGAGTGGTAGCGCAAGTGAGGGGGAGGAGGGGCCGAAGTCTGGTACAGATGTTGGGCGTGGTTTGAAT
GCGGGTAACGAGTCGAGTTCGGGTGTAGGGCCTTCTGCTGTAGATGTGGTTCAGCCAACGATTCCGCCTCTGACCGCAGTTGGGGCTCCCTCTCCAGTGGTGATATCGGC
TACGTTGGATAAGGGAAAGGTAGTGGTAGGGGATCAGCCCCTGGCGCATGTGATAGGAGGTGGTGTTGTGCCCCCTATTGTGTCGGTTTCGGGTAGGAAATGA
Protein sequenceShow/hide protein sequence
MAEVDEGAIDDLTEQWNNLGLSEEETKAVPIPDDIPLLDDATVQVCAVGKVLTSRFVNPDALKRAMFVLVSPSGADSPTLIDFTKCAFWVRINEVPLNFLTHAMARALGS
VIGHAEEVSGEGCGDWIGPIMRVRVVLDVTRPLRRVVRLRGSMENSRWCPIQYACSEGWGGRGGWPEGEGRGDCDRFQKGRGKGVGRGSGSASEGEEGPKSGTDVGRGLN
AGNESSSGVGPSAVDVVQPTIPPLTAVGAPSPVVISATLDKGKVVVGDQPLAHVIGGGVVPPIVSVSGRK