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Lag0012061 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012061
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:36978704..36979117
RNA-Seq ExpressionLag0012061
SyntenyLag0012061
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]8.7e-0532.38Show/hide
Query:  CTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLR-SSPHEWTSN
        CT  + AEA  V E L +      ++  V SDSL+L+K +    + D   I  I++D+  L    H V F++  R+ N+ +H VA +  R    H W   
Subjt:  CTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLR-SSPHEWTSN

Query:  FPDWL
         P+WL
Subjt:  FPDWL

KAF7086882.1 hypothetical protein CFC21_090137 [Triticum aestivum]1.3e-0531.93Show/hide
Query:  HICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTS
        ++C     AEA  V  GL         +  V SDS+ +V A+  G    S +  SI+ D   +   F  V + H NR+ NRV+HE+A+    SSP  W  
Subjt:  HICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTS

Query:  NFPDWLSLLVSQECHLFVS
        N PD +  L+  +  L ++
Subjt:  NFPDWLSLLVSQECHLFVS

KAF7100170.1 hypothetical protein CFC21_101709 [Triticum aestivum]5.1e-0533.05Show/hide
Query:  ICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTSN
        IC     AEA  V  GL         +  V SDS+ +V A+  G    S +  SI+ D   +   F  V + H NR+ NRV+HE+A+    SSP  W  N
Subjt:  ICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTSN

Query:  FPDWLSLLVSQECHLFVS
         PD +  L+  +  L ++
Subjt:  FPDWLSLLVSQECHLFVS

OVA14796.1 hypothetical protein BVC80_1143g10 [Macleaya cordata]2.3e-0534.83Show/hide
Query:  PICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSS
        PI AEA   L G++   + N     +  D + ++  I    +     I +I+ DIRSL++SFH + FVH+ R  N+ +H +A+F L SS
Subjt:  PICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSS

XP_027109537.1 uncharacterized protein LOC113729441 [Coffea arabica]5.1e-0530.51Show/hide
Query:  GDWVLAWS--SHICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQF
        G  V  W+  S  C++P+  EA  +   +     +  ER  + SD   ++  I+G    D  +I +++ DI+ L  +F    F  V+R+FN VSH  A++
Subjt:  GDWVLAWS--SHICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQF

Query:  GLR-SSPHEWTSNFPDWL
         L   S  +W + FP WL
Subjt:  GLR-SSPHEWTSNFPDWL

TrEMBL top hitse value%identityAlignment
A0A200QWF6 RNase H domain-containing protein1.1e-0534.83Show/hide
Query:  PICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSS
        PI AEA   L G++   + N     +  D + ++  I    +     I +I+ DIRSL++SFH + FVH+ R  N+ +H +A+F L SS
Subjt:  PICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSS

A0A3B6PUV6 RNase H domain-containing protein6.5e-0631.93Show/hide
Query:  HICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTS
        ++C     AEA  V  GL         +  V SDS+ +V A+  G    S +  SI+ D   +   F  V + H NR+ NRV+HE+A+    SSP  W  
Subjt:  HICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTS

Query:  NFPDWLSLLVSQECHLFVS
        N PD +  L+  +  L ++
Subjt:  NFPDWLSLLVSQECHLFVS

A0A3B6S9W2 RNase H domain-containing protein2.5e-0533.05Show/hide
Query:  ICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTSN
        IC     AEA  V  GL         +  V SDS+ +V A+  G    S +  SI+ D   +   F  V + H NR+ NRV+HE+A+    SSP  W  N
Subjt:  ICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWTSN

Query:  FPDWLSLLVSQECHLFVS
         PD +  L+  +  L ++
Subjt:  FPDWLSLLVSQECHLFVS

A0A4Y1R838 Ribonuclease H-like superfamily protein4.2e-0532.38Show/hide
Query:  CTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLR-SSPHEWTSN
        CT  + AEA  V E L +      ++  V SDSL+L+K +    + D   I  I++D+  L    H V F++  R+ N+ +H VA +  R    H W   
Subjt:  CTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLR-SSPHEWTSN

Query:  FPDWL
         P+WL
Subjt:  FPDWL

A0A6P6W5R8 uncharacterized protein LOC1137294412.5e-0530.51Show/hide
Query:  GDWVLAWS--SHICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQF
        G  V  W+  S  C++P+  EA  +   +     +  ER  + SD   ++  I+G    D  +I +++ DI+ L  +F    F  V+R+FN VSH  A++
Subjt:  GDWVLAWS--SHICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQF

Query:  GLR-SSPHEWTSNFPDWL
         L   S  +W + FP WL
Subjt:  GLR-SSPHEWTSNFPDWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAGATTGGGTTTTAGCTTGGTCATCTCATATTTGCACAATCCCTATTTGTGCTGAAGCAGCGACGGTTCTGGAAGGATTACGTTTCGTGCGTCGTCAAAATGT
AGAAAGACGGACGGTTATGTCTGATTCTCTTGCCTTGGTAAAGGCTATCAGGGGTGGTGGAATCCCGGATTCCTGTATAATTATTTCAATCATGTGGGATATCCGTAGTC
TTATTGCTTCTTTTCATAGGGTTAATTTTGTGCATGTTAATCGTCAGTTTAATAGGGTGTCTCATGAAGTGGCCCAGTTTGGCCTACGATCGAGTCCACATGAGTGGACT
TCAAATTTTCCTGATTGGCTTTCTCTGTTGGTTAGTCAAGAATGCCATCTCTTTGTATCCCCTAGGGGAGATTTTCTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAGATTGGGTTTTAGCTTGGTCATCTCATATTTGCACAATCCCTATTTGTGCTGAAGCAGCGACGGTTCTGGAAGGATTACGTTTCGTGCGTCGTCAAAATGT
AGAAAGACGGACGGTTATGTCTGATTCTCTTGCCTTGGTAAAGGCTATCAGGGGTGGTGGAATCCCGGATTCCTGTATAATTATTTCAATCATGTGGGATATCCGTAGTC
TTATTGCTTCTTTTCATAGGGTTAATTTTGTGCATGTTAATCGTCAGTTTAATAGGGTGTCTCATGAAGTGGCCCAGTTTGGCCTACGATCGAGTCCACATGAGTGGACT
TCAAATTTTCCTGATTGGCTTTCTCTGTTGGTTAGTCAAGAATGCCATCTCTTTGTATCCCCTAGGGGAGATTTTCTCGTTTAA
Protein sequenceShow/hide protein sequence
MVGDWVLAWSSHICTIPICAEAATVLEGLRFVRRQNVERRTVMSDSLALVKAIRGGGIPDSCIIISIMWDIRSLIASFHRVNFVHVNRQFNRVSHEVAQFGLRSSPHEWT
SNFPDWLSLLVSQECHLFVSPRGDFLV