; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012072 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012072
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr1:37064285..37067461
RNA-Seq ExpressionLag0012072
SyntenyLag0012072
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62679.1 hypothetical protein VITISV_012001 [Vitis vinifera]2.2e-1525.74Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWR-----------------
        ++N   +G + A+RGLRQ DPLSP L T+V D LS+ +    E+N+L+   V +++ +VT  Q+ADDT+ F +  E  L   +                 
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWR-----------------

Query:  -----------------------KSSQNSFTLR-----------------------------------SLKSFNW------------------------G
                               K+S N   +R                                   S + F+W                        G
Subjt:  -----------------------KSSQNSFTLR-----------------------------------SLKSFNW------------------------G

Query:  LIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIF
        L       + R W L+    F+ KS F T++  +          IWK   P KVK F+W VA++ +NT+D  Q +     L+P  C LC+K GE+ DH+F
Subjt:  LIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIF

Query:  LRC
        L C
Subjt:  LRC

CAN69687.1 hypothetical protein VITISV_026773 [Vitis vinifera]8.3e-1531.28Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTI-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLR
        ++N   +G + A+R LRQ DPLSP L T+V D LS+ +    E+N+L+   V R++ +          H       +  SN   I       S+ + TL 
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTI-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLR

Query:  SLKSFNWGLIWIG--FYGSWRAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKE
          K   W ++++G    G+ RA    F     F   + +F    +       +W    P KV+ F+W VA++ +NT+D +Q +     LSP  C LC+K 
Subjt:  SLKSFNWGLIWIG--FYGSWRAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKE

Query:  GENIDHIFLRC
        GE+ DHIFL C
Subjt:  GENIDHIFLRC

CAN72845.1 hypothetical protein VITISV_009108 [Vitis vinifera]5.6e-1933.83Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW
        ++N   +G + A+RGLRQ DPLSP L T+V   LS+ +    E+N+L+   V R++ +V+  Q+ADDT+ F +  E  L           TL+SL     
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW

Query:  GLIWIGFYGSWRAWVLAFTSKSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLR
         L+  G              K      N     L++  P   +W    P KVK F+W VA++ +NT+D +Q +     LSP    LC+K GE+ DH+FL 
Subjt:  GLIWIGFYGSWRAWVLAFTSKSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLR

Query:  C
        C
Subjt:  C

RVW16135.1 putative mitochondrial protein [Vitis vinifera]5.8e-1624.73Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW
        ++N   +G + A+RGLRQ DPLS  L T+V D LS+ +    E+N+++   V R++ +V+  Q+ DDT+ F ++ E  L   +        +  LK+  W
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW

Query:  GLIWIGF----------------YG--------------------------SWR------AWVLA-----------------------------------
         ++++G                 +G                          SWR       W+ +                                   
Subjt:  GLIWIGF----------------YG--------------------------SWR------AWVLA-----------------------------------

Query:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRC
        F+ KS F  ++  +          +W    P KVK F+W VA++ +NT+D +Q +     LSP  C LC+K GE+ DH+FL C
Subjt:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRC

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]3.6e-1854.55Show/hide
Query:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQK
        F++K +F  M     + N +T +LIWK    KKVK FLWS+AYRSLN  +++QRKF   +LSPS C LCLKE E  DH+FL CDFA K
Subjt:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQK

TrEMBL top hitse value%identityAlignment
A0A438BYP3 Putative mitochondrial protein2.8e-1624.73Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW
        ++N   +G + A+RGLRQ DPLS  L T+V D LS+ +    E+N+++   V R++ +V+  Q+ DDT+ F ++ E  L   +        +  LK+  W
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW

Query:  GLIWIGF----------------YG--------------------------SWR------AWVLA-----------------------------------
         ++++G                 +G                          SWR       W+ +                                   
Subjt:  GLIWIGF----------------YG--------------------------SWR------AWVLA-----------------------------------

Query:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRC
        F+ KS F  ++  +          +W    P KVK F+W VA++ +NT+D +Q +     LSP  C LC+K GE+ DH+FL C
Subjt:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRC

A0A5D3E632 Protein FAM91A11.8e-1854.55Show/hide
Query:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQK
        F++K +F  M     + N +T +LIWK    KKVK FLWS+AYRSLN  +++QRKF   +LSPS C LCLKE E  DH+FL CDFA K
Subjt:  FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQK

A5APK6 Reverse transcriptase domain-containing protein1.1e-1525.74Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWR-----------------
        ++N   +G + A+RGLRQ DPLSP L T+V D LS+ +    E+N+L+   V +++ +VT  Q+ADDT+ F +  E  L   +                 
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWR-----------------

Query:  -----------------------KSSQNSFTLR-----------------------------------SLKSFNW------------------------G
                               K+S N   +R                                   S + F+W                        G
Subjt:  -----------------------KSSQNSFTLR-----------------------------------SLKSFNW------------------------G

Query:  LIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIF
        L       + R W L+    F+ KS F T++  +          IWK   P KVK F+W VA++ +NT+D  Q +     L+P  C LC+K GE+ DH+F
Subjt:  LIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIF

Query:  LRC
        L C
Subjt:  LRC

A5B4S4 Reverse transcriptase domain-containing protein4.0e-1531.28Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTI-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLR
        ++N   +G + A+R LRQ DPLSP L T+V D LS+ +    E+N+L+   V R++ +          H       +  SN   I       S+ + TL 
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTI-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLR

Query:  SLKSFNWGLIWIG--FYGSWRAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKE
          K   W ++++G    G+ RA    F     F   + +F    +       +W    P KV+ F+W VA++ +NT+D +Q +     LSP  C LC+K 
Subjt:  SLKSFNWGLIWIG--FYGSWRAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKE

Query:  GENIDHIFLRC
        GE+ DHIFL C
Subjt:  GENIDHIFLRC

A5BYD5 Reverse transcriptase domain-containing protein2.7e-1933.83Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW
        ++N   +G + A+RGLRQ DPLSP L T+V   LS+ +    E+N+L+   V R++ +V+  Q+ADDT+ F +  E  L           TL+SL     
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNW

Query:  GLIWIGFYGSWRAWVLAFTSKSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLR
         L+  G              K      N     L++  P   +W    P KVK F+W VA++ +NT+D +Q +     LSP    LC+K GE+ DH+FL 
Subjt:  GLIWIGFYGSWRAWVLAFTSKSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLR

Query:  C
        C
Subjt:  C

SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012509.0e-0436.76Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDT
        +IN  P+G +  +RGLRQ DPLSP L  +  + LS   +   E+  L  + VS +  ++    +ADDT
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDT

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)6.4e-0536.76Show/hide
Query:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDT
        +IN  P+G +  +RGLRQ DPLSP L  +  + LS   +   E+  L  + VS +  ++    +ADDT
Subjt:  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAATAGAAGACCTAGAGGTAAGATTCTAGCGACTAGGGGATTAAGACAAGACGACCCACTTTCCCCCTCTCTTTCCACCATTGTGAGAGATGCTCTAAGCCAATC
GATTCAATATTGCTTGGAGAAAAACATCCTAAAAGATCTTACTGTGAGCAGACACAAGGTGAAGGTAACTATCCATCAATACGCGGATGATACGATGGTCTTTTGCTCAA
ATGAGGAAGCAATCCTAGACAAATGGAGGAAATCATCACAGAATAGCTTCACTTTGAGGAGCTTGAAATCATTCAATTGGGGACTCATATGGATAGGATTCTATGGAAGT
TGGAGGGCATGGGTGCTTGCTTTCACCAGCAAGTCTATGTTTAGAACTATGAATTTTGTAACTTTCAGATTAAACAAAACTACACCTGACCTGATCTGGAAGCACAATTG
CCCGAAGAAAGTAAAAATTTTCCTTTGGTCCGTGGCGTACCGAAGCTTGAACACGGATGATAGGGTGCAAAGAAAATTTAACGAGTGGACCCTCTCTCCCTCGGCTTGTA
GACTATGCCTTAAAGAAGGAGAGAACATAGATCATATTTTCCTTCGTTGCGACTTTGCTCAAAAGATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGT
GAAAAGGAGTATGATGGTGGAGAGGTGAGGGCCTTAGACGTGGATGTGGGAATTTCTTATAACGAGTTCTTAGGTCAAGTGTATGAAATAAGTAGTATAAGTCCGAATGA
TAACGACATTGTTTTGAGGTGTCTGCTTGAACTGAGGTCTAAATCTCCGCTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAATAGAAGACCTAGAGGTAAGATTCTAGCGACTAGGGGATTAAGACAAGACGACCCACTTTCCCCCTCTCTTTCCACCATTGTGAGAGATGCTCTAAGCCAATC
GATTCAATATTGCTTGGAGAAAAACATCCTAAAAGATCTTACTGTGAGCAGACACAAGGTGAAGGTAACTATCCATCAATACGCGGATGATACGATGGTCTTTTGCTCAA
ATGAGGAAGCAATCCTAGACAAATGGAGGAAATCATCACAGAATAGCTTCACTTTGAGGAGCTTGAAATCATTCAATTGGGGACTCATATGGATAGGATTCTATGGAAGT
TGGAGGGCATGGGTGCTTGCTTTCACCAGCAAGTCTATGTTTAGAACTATGAATTTTGTAACTTTCAGATTAAACAAAACTACACCTGACCTGATCTGGAAGCACAATTG
CCCGAAGAAAGTAAAAATTTTCCTTTGGTCCGTGGCGTACCGAAGCTTGAACACGGATGATAGGGTGCAAAGAAAATTTAACGAGTGGACCCTCTCTCCCTCGGCTTGTA
GACTATGCCTTAAAGAAGGAGAGAACATAGATCATATTTTCCTTCGTTGCGACTTTGCTCAAAAGATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGT
GAAAAGGAGTATGATGGTGGAGAGGTGAGGGCCTTAGACGTGGATGTGGGAATTTCTTATAACGAGTTCTTAGGTCAAGTGTATGAAATAAGTAGTATAAGTCCGAATGA
TAACGACATTGTTTTGAGGTGTCTGCTTGAACTGAGGTCTAAATCTCCGCTTTTGTGA
Protein sequenceShow/hide protein sequence
MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGFYGS
WRAWVLAFTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQKMPRVWVCFGGVWKES
EKEYDGGEVRALDVDVGISYNEFLGQVYEISSISPNDNDIVLRCLLELRSKSPLL