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Lag0012077 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012077
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchr1:37090338..37090751
RNA-Seq ExpressionLag0012077
SyntenyLag0012077
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603426.1 hypothetical protein SDJN03_04035, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0444.9Show/hide
Query:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGEFRFHELEEL
        MAFLLCSNPLS SLHSS F  SPSPSPSCFP   AA + +LL+      F P   F+G+      F+ N+VS   F++     ++  GE   +E + L
Subjt:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGEFRFHELEEL

KAG7027445.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.5e-0475.61Show/hide
Query:  MAFLLCSNPLSTSLHSSPFSPSPSPSCFPTTSAAPSKLLLL
        MAFLLCSNP+STSLHSS F   PSPSCFP TSAA S +LL+
Subjt:  MAFLLCSNPLSTSLHSSPFSPSPSPSCFPTTSAAPSKLLLL

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]4.9e-0851.16Show/hide
Query:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGE
        MAFLLCSNPLSTSL+SSPF  SPSPSPSCFPTTSAAPS +LL+  +   F P  +F+G+    +S   ++   ++     ++  GE
Subjt:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGE

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]1.9e-0446.15Show/hide
Query:  MAFLLCSNPLSTSLHSSPF----SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGE
        MAFLLCSNPLS SLHSS F    SPSPSPSCFP   AA + +LL+      F P   F+G+      F+ N+VS   F++     ++  GE
Subjt:  MAFLLCSNPLSTSLHSSPF----SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGE

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]9.3e-0780.95Show/hide
Query:  AFLLCSNPLSTSLHSSPFS--PSPSPSCFPTTSAAPSKLLLL
        +FLLCSNPLSTSLHS PFS  PSPSPSCFP TSAAPS +LL+
Subjt:  AFLLCSNPLSTSLHSSPFS--PSPSPSCFPTTSAAPSKLLLL

TrEMBL top hitse value%identityAlignment
A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.4e-0851.16Show/hide
Query:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGE
        MAFLLCSNPLSTSL+SSPF  SPSPSPSCFPTTSAAPS +LL+  +   F P  +F+G+    +S   ++   ++     ++  GE
Subjt:  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGE

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like9.4e-0546.15Show/hide
Query:  MAFLLCSNPLSTSLHSSPF----SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGE
        MAFLLCSNPLS SLHSS F    SPSPSPSCFP   AA + +LL+      F P   F+G+      F+ N+VS   F++     ++  GE
Subjt:  MAFLLCSNPLSTSLHSSPF----SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI---ERMFLSNSVSSYLFVLMPMLRVNENGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCACCGTCGCCGTCGTGTTTTCCGACGACTTCCGCCGCCCCGAGTAA
GCTTCTCCTCCTCCTCTTCCTCTCCCGGGATTTCCTTCCCACCTCTTTGTTCGATGGGATCGAACGAATGTTCTTGTCTAATTCTGTATCTTCATATCTCTTTGTACTTA
TGCCTATGCTGCGTGTTAATGAAAATGGAGAGTTTCGTTTTCACGAACTCGAGGAACTGCGTTTATTTTGCTCGAAAGAATTGCCTTGCAGTGATTTGTTTGTTAGGCAT
TTTGTCAAACAGTTGGTATCCGTGTGTAGAGGCTTTCGATTTTACGTTACTCAGTTGATGTGCACTGGATTCTTGCCTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCACCGTCGCCGTCGTGTTTTCCGACGACTTCCGCCGCCCCGAGTAA
GCTTCTCCTCCTCCTCTTCCTCTCCCGGGATTTCCTTCCCACCTCTTTGTTCGATGGGATCGAACGAATGTTCTTGTCTAATTCTGTATCTTCATATCTCTTTGTACTTA
TGCCTATGCTGCGTGTTAATGAAAATGGAGAGTTTCGTTTTCACGAACTCGAGGAACTGCGTTTATTTTGCTCGAAAGAATTGCCTTGCAGTGATTTGTTTGTTAGGCAT
TTTGTCAAACAGTTGGTATCCGTGTGTAGAGGCTTTCGATTTTACGTTACTCAGTTGATGTGCACTGGATTCTTGCCTGCCTGA
Protein sequenceShow/hide protein sequence
MAFLLCSNPLSTSLHSSPFSPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGEFRFHELEELRLFCSKELPCSDLFVRH
FVKQLVSVCRGFRFYVTQLMCTGFLPA