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Lag0012078 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012078
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationchr1:37091989..37092345
RNA-Seq ExpressionLag0012078
SyntenyLag0012078
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.6e-4792.37Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKP GF+PKHFNGVRLR+PSFVENTVS IVKAASEIDATGE DS+EP+P AEAKKEDV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]3.2e-4893.22Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKP GF+PKHFNGVRLR+PSFVENTVS IVKAASEIDATGE DS+EP+PPAEAKKEDV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_022967912.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima]4.6e-4791.53Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        M LMKP GF+PKHFNGVRLR+PSFVENTVS IVKAASEID TGE DS+EP+P AEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]1.2e-4792.37Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKP GF+PKHFNGVRLR+PSFVENTVS  VKAASEIDATGE DS+EP+P AEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]2.3e-4691.53Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKPIGF+PKHFNGVRL  PSFVEN  SLIVKAASEIDA G+ DSSE QPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein2.5e-4690.68Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKPIGF+PKHFNGVRLR+ SFVENT SL+VKAASE DATGE DSS+ QP AEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A5D3CEM6 50S ribosomal protein 51.0e-4489.83Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKPIGF+PK FNGVRLR+  FVENT SL+VKAASE DATGE DSSE QP AEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic7.2e-4688.98Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        +LLM+P+GF+PK FNGVRLR+ SFVENT SLIVKA SEID TGE DS+EPQPPAEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.6e-4893.22Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        MLLMKP GF+PKHFNGVRLR+PSFVENTVS IVKAASEIDATGE DS+EP+PPAEAKKEDV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like2.2e-4791.53Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
        M LMKP GF+PKHFNGVRLR+PSFVENTVS IVKAASEID TGE DS+EP+P AEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic1.6e-1347.32Show/hide
Query:  IGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGR
        IG       G R+  P   +   + I  A++   A         +  ++ + + V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG 
Subjt:  IGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGR

Query:  WPPSKMKKLKNV
        WPPSKMKKL+ V
Subjt:  WPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.4e-1458.24Show/hide
Query:  TVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        TV  +V AA+E  A  + D S      + ++ ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKNV
Subjt:  TVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic8.3e-1552.89Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVR
        +L +KP     K  N V L   S   +   ++VKAA+      EP+S E      A    VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLVR
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVR

Query:  KRHLRKKGRWPPSKMKKLKNV
        KR +RKKGRWPPSKMKK KNV
Subjt:  KRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 55.9e-1652.89Show/hide
Query:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVR
        +L +KP     K  N V L   S   +   ++VKAA+      EP+S E      A    VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLVR
Subjt:  MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVR

Query:  KRHLRKKGRWPPSKMKKLKNV
        KR +RKKGRWPPSKMKK KNV
Subjt:  KRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTCATGAAGCCTATAGGGTTTCGGCCAAAACATTTCAATGGAGTTCGACTTCGACACCCCTCTTTTGTTGAAAATACGGTGTCATTGATTGTCAAAGCTGCCTC
TGAGATTGATGCTACGGGAGAACCTGACAGTAGTGAACCACAGCCCCCAGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAG
AAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTCCGGCGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCA
AAGATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTCATGAAGCCTATAGGGTTTCGGCCAAAACATTTCAATGGAGTTCGACTTCGACACCCCTCTTTTGTTGAAAATACGGTGTCATTGATTGTCAAAGCTGCCTC
TGAGATTGATGCTACGGGAGAACCTGACAGTAGTGAACCACAGCCCCCAGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAG
AAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTCCGGCGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCA
AAGATGAAGAAGTTGAAGAATGTTTGA
Protein sequenceShow/hide protein sequence
MLLMKPIGFRPKHFNGVRLRHPSFVENTVSLIVKAASEIDATGEPDSSEPQPPAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPS
KMKKLKNV