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Lag0012090 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012090
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:37195268..37196080
RNA-Seq ExpressionLag0012090
SyntenyLag0012090
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1436.88Show/hide
Query:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI--CFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSED
        ++W  P    WKLN++AAW A    GGIGW++RD  G  I    R+++  +N  I  LE  AI EG++ I     +   P+ +ESD+LE + +L+   +D
Subjt:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI--CFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSED

Query:  LTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA
         TE     EEI ++++    + +RH SR  N  AH +A+RA
Subjt:  LTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.7e-1433.73Show/hide
Query:  QDSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQR
        + S+ S + L  L+      L +  +W  PP   W LN+DA+W+    RGGIGW++R  +G  +      +     +K LEA AILEG++ + +    + 
Subjt:  QDSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQR

Query:  IPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANL
         PL IE+D+ EV  +LN   EDLT+T    EEI  + +    +      R  N  AH +A+RA+ L
Subjt:  IPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-1540.82Show/hide
Query:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI---CFRMLQINKNWAIKTLEARAILEG---IKQIHSTCNQQR--IPLKIESDALEVVKIL
        +RW  P    WKLN+DAAW A    GGIGW++RD  G  I   C R+++  +N  I  LE  AI EG   I+Q H    QQ    P+ +ESD+LE + +L
Subjt:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI---CFRMLQINKNWAIKTLEARAILEG---IKQIHSTCNQQR--IPLKIESDALEVVKIL

Query:  NGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA
        +   +D TE     EEI +++E    + +RH SR  N  AH +A+RA
Subjt:  NGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA

XP_024035485.1 uncharacterized protein LOC112096288 [Citrus clementina]9.4e-1230.18Show/hide
Query:  DSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRI
        +SF  +   K     R G  +S   W  PP  C+K+N DAA    E + G+G +VR+S G  +   +  +     + ++EA+A+L GI+          +
Subjt:  DSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRI

Query:  PLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANLPPPC
        P+ IESD+ EVV +     E   E +    EI+  +       I+   R  N AAH VAK+A  +   C
Subjt:  PLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANLPPPC

XP_024043255.1 uncharacterized protein LOC112099951 [Citrus clementina]4.2e-1230.77Show/hide
Query:  DSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRI
        +SF  +   K     R G  +S   W  PP  C+K+N DAA    E + G+G +VR+S G  +   +  +     + ++EA+A+L GI+          +
Subjt:  DSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRI

Query:  PLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANLPPPC
        P+ IESD+ EVV +     E  TE      EI+  +       I+   R  N AAH VAK+A  +   C
Subjt:  PLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANLPPPC

TrEMBL top hitse value%identityAlignment
A0A5J9U9H2 RNase H domain-containing protein (Fragment)5.1e-1127.66Show/hide
Query:  VSTNSPLMSREGQDSFNSLSYLKTLYSER------------PGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWA
        ++ + P MS EG   F  LSY  TL++ R            PGN+ +  +W+KPP    K+N DAA++   GR G+G ++R+ +G  +      +    +
Subjt:  VSTNSPLMSREGQDSFNSLSYLKTLYSER------------PGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWA

Query:  IKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAA
         +  E  A  EG   ++       +P ++ESD L V   L  + E+ +   +   E+++++     + I HC+R  N  +H +A RA+
Subjt:  IKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAA

A0A6J1CP26 uncharacterized protein LOC1110134129.8e-1536.88Show/hide
Query:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI--CFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSED
        ++W  P    WKLN++AAW A    GGIGW++RD  G  I    R+++  +N  I  LE  AI EG++ I     +   P+ +ESD+LE + +L+   +D
Subjt:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI--CFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSED

Query:  LTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA
         TE     EEI ++++    + +RH SR  N  AH +A+RA
Subjt:  LTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA

A0A6J1CQG0 uncharacterized protein LOC1110132166.0e-1237.37Show/hide
Query:  RWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSEDLT
        RW  PP  CWKLN+DA+W+ +   GGIGW++ D  G  +     +I +   I  LE   I+ G++ I+    Q R P+ +ESD++EV++++  +  DLT
Subjt:  RWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGDSEDLT

A0A6J1DNV9 uncharacterized protein LOC1110224033.7e-1433.73Show/hide
Query:  QDSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQR
        + S+ S + L  L+      L +  +W  PP   W LN+DA+W+    RGGIGW++R  +G  +      +     +K LEA AILEG++ + +    + 
Subjt:  QDSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQR

Query:  IPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANL
         PL IE+D+ EV  +LN   EDLT+T    EEI  + +    +      R  N  AH +A+RA+ L
Subjt:  IPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANL

A0A6J1DSV1 uncharacterized protein LOC1110236085.2e-1640.82Show/hide
Query:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI---CFRMLQINKNWAIKTLEARAILEG---IKQIHSTCNQQR--IPLKIESDALEVVKIL
        +RW  P    WKLN+DAAW A    GGIGW++RD  G  I   C R+++  +N  I  LE  AI EG   I+Q H    QQ    P+ +ESD+LE + +L
Subjt:  SRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPI---CFRMLQINKNWAIKTLEARAILEG---IKQIHSTCNQQR--IPLKIESDALEVVKIL

Query:  NGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA
        +   +D TE     EEI +++E    + +RH SR  N  AH +A+RA
Subjt:  NGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0731.58Show/hide
Query:  NSPLMSREGQDSFNSLSYLKTLYSERPGNLVSHS---RWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICF--RMLQINKNWAIKTLEARAIL
        ++P + R   + F   S  + L  +  G  V  +   +W  PP    K N+DA W  +  R GIGW++R+ +G  +    R L   KN     LEA   L
Subjt:  NSPLMSREGQDSFNSLSYLKTLYSERPGNLVSHS---RWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICF--RMLQINKNWAIKTLEARAIL

Query:  EGIKQIHSTCNQQRIPLKIESDALEVVKILNGD
               S  N +RI    ESDA  +V +LN D
Subjt:  EGIKQIHSTCNQQRIPLKIESDALEVVKILNGD

AT4G29090.1 Ribonuclease H-like superfamily protein4.8e-0627.08Show/hide
Query:  NLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGD
        N  S  RW  PP    K N+DA WN    R GIGW++R+  G         + K  ++   E  A+   +    S    Q   +  ESD+  +++ILN D
Subjt:  NLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHSTCNQQRIPLKIESDALEVVKILNGD

Query:  SEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA
         E     K   +++++++     ++     R  NT A  VA+ +
Subjt:  SEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCCAGTTTCTACAAATTCACCGTTGATGTCACGTGAAGGTCAGGATTCATTCAATAGTTTATCTTACCTCAAGACTCTGTATTCGGAAAGGCCAGGGAACCT
TGTGAGTCATTCTCGATGGTTGAAACCGCCGCAAGCCTGCTGGAAATTAAACTCCGACGCCGCCTGGAATGCCAAGGAAGGTCGAGGAGGGATTGGGTGGCTTGTGCGTG
ACTCAAATGGATCCCCGATCTGTTTCAGAATGCTTCAAATTAACAAGAATTGGGCAATCAAGACCTTGGAAGCGAGAGCAATCCTAGAGGGGATTAAACAAATTCATAGT
ACCTGTAATCAGCAACGCATTCCCCTCAAAATAGAATCGGACGCTTTAGAAGTGGTGAAAATTCTCAACGGTGATTCAGAAGACCTTACGGAAACAAAAATCTTTACGGA
AGAAATTAGGAAAATCGTAGAGTGCTCGTTTTCCATGGAAATCAGGCATTGTAGCCGCCTTTTGAACACAGCCGCGCACTGTGTTGCGAAGAGAGCTGCGAACCTTCCCC
CTCCATGCACGAGTTCTTCGTCTTCTGGGTTAGGTAGCAGGATCTCCCTTTCGTGGGAAACAAAGCATGTATTTTGGACTCCTAATATTCCTTCTTGGCTTTTTCCCCTT
ATTTATGAGGGAAGTTGTAATGATCATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCCAGTTTCTACAAATTCACCGTTGATGTCACGTGAAGGTCAGGATTCATTCAATAGTTTATCTTACCTCAAGACTCTGTATTCGGAAAGGCCAGGGAACCT
TGTGAGTCATTCTCGATGGTTGAAACCGCCGCAAGCCTGCTGGAAATTAAACTCCGACGCCGCCTGGAATGCCAAGGAAGGTCGAGGAGGGATTGGGTGGCTTGTGCGTG
ACTCAAATGGATCCCCGATCTGTTTCAGAATGCTTCAAATTAACAAGAATTGGGCAATCAAGACCTTGGAAGCGAGAGCAATCCTAGAGGGGATTAAACAAATTCATAGT
ACCTGTAATCAGCAACGCATTCCCCTCAAAATAGAATCGGACGCTTTAGAAGTGGTGAAAATTCTCAACGGTGATTCAGAAGACCTTACGGAAACAAAAATCTTTACGGA
AGAAATTAGGAAAATCGTAGAGTGCTCGTTTTCCATGGAAATCAGGCATTGTAGCCGCCTTTTGAACACAGCCGCGCACTGTGTTGCGAAGAGAGCTGCGAACCTTCCCC
CTCCATGCACGAGTTCTTCGTCTTCTGGGTTAGGTAGCAGGATCTCCCTTTCGTGGGAAACAAAGCATGTATTTTGGACTCCTAATATTCCTTCTTGGCTTTTTCCCCTT
ATTTATGAGGGAAGTTGTAATGATCATTTTTAG
Protein sequenceShow/hide protein sequence
MSSPVSTNSPLMSREGQDSFNSLSYLKTLYSERPGNLVSHSRWLKPPQACWKLNSDAAWNAKEGRGGIGWLVRDSNGSPICFRMLQINKNWAIKTLEARAILEGIKQIHS
TCNQQRIPLKIESDALEVVKILNGDSEDLTETKIFTEEIRKIVECSFSMEIRHCSRLLNTAAHCVAKRAANLPPPCTSSSSSGLGSRISLSWETKHVFWTPNIPSWLFPL
IYEGSCNDHF