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Lag0012176 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012176
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:38304599..38305000
RNA-Seq ExpressionLag0012176
SyntenyLag0012176
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF31413.1 conserved hypothetical protein [Ricinus communis]5.8e-0633.06Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIE--TYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ
        +VA  +   Y  S EM E L +  G++LA   GI  + VE+D   V N +  I    +  E+ NI+ DI    +  ++ + + +SR SN +A+ LA   +
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIE--TYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ

Query:  RNRVDGVWME-EAPPWANNLVSFD
         + V  VW+E E+P W +NL+  D
Subjt:  RNRVDGVWME-EAPPWANNLVSFD

XP_011463604.1 PREDICTED: uncharacterized protein LOC105351321 [Fragaria vesca subsp. vesca]3.4e-0635.78Show/hide
Query:  SIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPP
        ++ +AEAL++R G+  AK  G   + VE DS LV +++ G+ T       + +DIK   +S E        RE+N VANA+A    R     VW E  PP
Subjt:  SIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPP

Query:  WANNLVSFD
         A   ++FD
Subjt:  WANNLVSFD

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]3.4e-0631.4Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN
        M A  ++GP + S + AE LA R+ +E A   G + + +E DS+ V   +       +   N++ DIK  ++          +R+ N+VA+ALA  A   
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN

Query:  RVDGVWMEEAPPWANNLVSFD
          D  WME+APP A + +  D
Subjt:  RVDGVWMEEAPPWANNLVSFD

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]2.6e-0635.14Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN
        M A  S  PY G +E+AEALAI EG++LA    + P  +E+DS  V N +    +   E   I+ +I+  +          T    N VA+ALA  A  N
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN

Query:  RVDGVWMEEAP
            VW++E P
Subjt:  RVDGVWMEEAP

XP_024039172.1 uncharacterized protein LOC112097823 [Citrus clementina]3.4e-0640.43Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALA
        M+A    G Y   + +AEA AIR GI LAK TG+ P+ +E+DSL V  L+QG +    E   II D++  +   +   +   SR  NQ A+ALA
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALA

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)1.3e-0635.14Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN
        M A  S  PY G +E+AEALAI EG++LA    + P  +E+DS  V N +    +   E   I+ +I+  +          T    N VA+ALA  A  N
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRN

Query:  RVDGVWMEEAP
            VW++E P
Subjt:  RVDGVWMEEAP

A0A5C7GQX3 RNase H domain-containing protein2.4e-0534.91Show/hide
Query:  MAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPPWAN
        +AEALA+ EG+ LAKL G  P  +E+D+L V   +   E+  ++   +I+DI F+             R +N+VA+ LA  A  N  + VW  + P    
Subjt:  MAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPPWAN

Query:  NLVSFD
        NLV  D
Subjt:  NLVSFD

A0A6J1DZK3 uncharacterized protein LOC1110249681.8e-0534.51Show/hide
Query:  MAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPPWAN
        +A+ LAIREG+ LA   G+H + VETDSL   NL+     ++ E  + +EDI+ +    +        RESN VA  L       R   +W  + P W  
Subjt:  MAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEAPPWAN

Query:  NLVSFDKGEGNSV
         L   + G+ NSV
Subjt:  NLVSFDKGEGNSV

A0A803PIB6 Uncharacterized protein2.4e-0532.74Show/hide
Query:  MVAAQSVGPYLGSI--EMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ
        ++AA S  P +G+   +  EA A+  G++ AK   + P  VETD L++ + +QG ++  +  H+++EDI ++L+S     +    R++NQ A+ LA  A 
Subjt:  MVAAQSVGPYLGSI--EMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ

Query:  RNRVDGVWMEEAP
        +   D +W+EE P
Subjt:  RNRVDGVWMEEAP

B9SYA9 RNase H domain-containing protein2.8e-0633.06Show/hide
Query:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIE--TYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ
        +VA  +   Y  S EM E L +  G++LA   GI  + VE+D   V N +  I    +  E+ NI+ DI    +  ++ + + +SR SN +A+ LA   +
Subjt:  MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIE--TYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQ

Query:  RNRVDGVWME-EAPPWANNLVSFD
         + V  VW+E E+P W +NL+  D
Subjt:  RNRVDGVWME-EAPPWANNLVSFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCCGCCCAATCTGTTGGTCCATATCTGGGATCAATTGAAATGGCTGAAGCTCTTGCAATTCGGGAGGGGATTGAACTCGCAAAGTTAACGGGTATTCATCCAAT
TTGGGTGGAAACCGATTCTCTTCTAGTTTGGAACTTAGTTCAAGGAATTGAAACCTATGAGAATGAAACCCATAATATAATAGAAGATATCAAGTTTTACCTAAATTCAG
GGGAGATGGAAGAGTTATTACTAACCTCTAGAGAATCAAACCAAGTCGCCAATGCTTTAGCTACCCACGCTCAAAGAAATCGCGTCGATGGAGTATGGATGGAAGAAGCT
CCCCCTTGGGCGAACAATCTGGTTAGCTTCGACAAAGGAGAAGGAAACAGCGTCGAAGACAGTGGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGCCGCCCAATCTGTTGGTCCATATCTGGGATCAATTGAAATGGCTGAAGCTCTTGCAATTCGGGAGGGGATTGAACTCGCAAAGTTAACGGGTATTCATCCAAT
TTGGGTGGAAACCGATTCTCTTCTAGTTTGGAACTTAGTTCAAGGAATTGAAACCTATGAGAATGAAACCCATAATATAATAGAAGATATCAAGTTTTACCTAAATTCAG
GGGAGATGGAAGAGTTATTACTAACCTCTAGAGAATCAAACCAAGTCGCCAATGCTTTAGCTACCCACGCTCAAAGAAATCGCGTCGATGGAGTATGGATGGAAGAAGCT
CCCCCTTGGGCGAACAATCTGGTTAGCTTCGACAAAGGAGAAGGAAACAGCGTCGAAGACAGTGGGTTTTAG
Protein sequenceShow/hide protein sequence
MVAAQSVGPYLGSIEMAEALAIREGIELAKLTGIHPIWVETDSLLVWNLVQGIETYENETHNIIEDIKFYLNSGEMEELLLTSRESNQVANALATHAQRNRVDGVWMEEA
PPWANNLVSFDKGEGNSVEDSGF